Company lists · Data refreshed September 2026

Top 25 Transcriptomics software companies based in San Diego, United States

Name: Transcriptomics software companies based in San Diego, United States
Creator: RevenueBase
License: https://creativecommons.org/licenses/by/4.0/

Compiled by the RevenueBase Data Team Data refreshed Sep 13, 2026 49 companies tracked

RevenueBase identified 49 transcriptomics software companies headquartered in San Diego, United States as of September 2026 and tracks 10,829 professional contacts across them, including 5,231 with verified work emails and 3,912 with mobile numbers. San Diego is the largest hub.

This list covers transcriptomics software companies headquartered in San Diego, United States, matched on what each company actually does as described in its own words. Ranked by team size, largest first. Every row shows the company's own description, its RevenueBase Smart Search rating, and when it was last checked. Data refreshed September 13, 2026.

Published by RevenueBase, a B2B data infrastructure company. This list was built with RevenueBase Smart Search, the natural-language company search RevenueBase customers use to build their own targeted lists and unlock verified emails and direct dials at the companies on them. How these lists are built and judged.

How to read this list HQ checked on every row RevenueBase Smart Search rating on every row Refreshed Sep 13, 2026 86% judged on-target in blind review

49Companies

10,829Contacts tracked

5,231Verified emails

3,912Mobile numbers

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The 25 largest transcriptomics software companies based in San Diego, United States

Ranked by team size

Top 25 of 49 transcriptomics software companies based in San Diego, United States, ranked by team size, largest first. Data refreshed Sep 13, 2026. RevenueBase Smart Search rates how each company's information relates to transcriptomics software companies: strong evidence (its own description names it), partial (names part of it), indirect (matched on the rest of its profile rather than the description shown). Click a contact count to view that company's people.
#	Company	RevenueBase Smart Search	Headquarters	Employees	Contacts
1	Illumina	Indirect evidence	San Diego, CA, United StatesHQ checked Sep 13, 2026	5,001-10,000	8,987 contacts →
	Indirect evidence “At Illumina, our goal is to apply innovative technologies and revolutionary assays to the analysis of genetic variation and function, making studies possible that were not even…” Source: RevenueBase Database · checked Sep 13, 2026
2	Trilink Biotechnologies, Part Of Maravai Lifesciences	Indirect evidence	San Diego, CA, United StatesHQ checked Sep 13, 2026	201-500	331 contacts →
	Indirect evidence “TriLink BioTechnologies, a Maravai LifeSciences company, is a global leader in nucleic acid and mRNA solutions.” Source: RevenueBase Database · checked Sep 13, 2026
3	Bionano	Indirect evidence	San Diego, CA, United StatesHQ checked Sep 13, 2026	201-500	183 contacts →
	Indirect evidence “Bionano is a provider of genome analysis solutions that can enable researchers and clinicians to reveal answers to challenging questions in biology and medicine.” Source: RevenueBase Database · checked Sep 13, 2026
4	Agena Bioscience	Indirect evidence	San Diego, CA, United StatesHQ checked Sep 13, 2026	51-200	135 contacts →
	Indirect evidence “Agena Bioscience® empowers research laboratories worldwide to deliver scalable targeted genomic data.” Source: RevenueBase Database · checked Sep 13, 2026
5	BPS Bioscience INC	Indirect evidence	San Diego, CA, United StatesHQ checked Sep 13, 2026	51-200	115 contacts →
	Indirect evidence “BPS Bioscience advances new scientific discoveries that lead to therapies by creating innovative solutions for research.” Source: RevenueBase Database · checked Sep 13, 2026
6	Bioturing	Indirect evidence	San Diego, CA, United StatesHQ checked Sep 13, 2026	51-200	78 contacts →
	Indirect evidence “BioTuring is an innovative bioinformatics company based in San Diego.” Source: RevenueBase Database · checked Sep 13, 2026
7	Sapient	Indirect evidence	San Diego, CA, United StatesHQ checked Sep 13, 2026	51-200	67 contacts →
	Indirect evidence “Sapient is a leader in multi-omics data generation and insight delivery, providing bespoke services for proteomics, metabolomics, and lipidomics that enable biopharma sponsors to…” Source: RevenueBase Database · checked Sep 13, 2026
8	Eton Bioscience	Indirect evidence	San Diego, CA, United StatesHQ checked Sep 13, 2026	51-200	55 contacts →
	Indirect evidence “Eton Bioscience Inc.” Source: RevenueBase Database · checked Sep 13, 2026
9	Eclipsebio	Indirect evidence	San Diego, CA, United StatesHQ checked Sep 13, 2026	11-50	49 contacts →
	Indirect evidence “Eclipsebio develops first-in-class technologies, analyses, and platforms for the development of tomorrow’s RNA-based and RNA-targeting therapies.” Source: RevenueBase Database · checked Sep 13, 2026
10	Pleno INC	Indirect evidence	San Diego, CA, United StatesHQ checked Sep 13, 2026	11-50	44 contacts →
	Indirect evidence Source: RevenueBase Database · checked Sep 13, 2026
11	Allele Biotechnology & Pharmaceuticals INC	Indirect evidence	San Diego, CA, United StatesHQ checked Sep 13, 2026	11-50	30 contacts →
	Indirect evidence “Allele Biotechnology and Pharmaceuticals, Inc.” Source: RevenueBase Database · checked Sep 13, 2026
12	Genegocell INC	Indirect evidence	San Diego, CA, United StatesHQ checked Sep 13, 2026	11-50	22 contacts →
	Indirect evidence “We are a San Diego Life Science Company supporting the Gene and Cell Therapy industry by providing one-stop custom NGS and Flow Cytometry Solutions, from assay design to data…” Source: RevenueBase Database · checked Sep 13, 2026
13	Alida Biosciences	Indirect evidence	San Diego, United StatesHQ checked Sep 13, 2026	11-50	19 contacts →
	Indirect evidence “Alida Biosciences is developing the next generation of RNA analysis tools to enable new medical treatments and diagnostic assays.” Source: RevenueBase Database · checked Sep 13, 2026
14	Jumpcode Genomics	Indirect evidence	San Diego, CA, United StatesHQ checked Sep 13, 2026	11-50	14 contacts →
	Indirect evidence “Jumpcode Genomics is changing the way scientists see their samples with our proprietary CRISPRclean® technology.” Source: RevenueBase Database · checked Sep 13, 2026
15	Partek, An Illumina Company	Partial evidence	San Diego, CA, United StatesHQ checked Sep 13, 2026	11-50	12 contacts →
	Partial evidence “Partek Incorporated, an Illumina provides analysis software and services for life sciences research and specializes in innovative solutions for integrated genomics, big data, and…” Source: RevenueBase Database · checked Sep 13, 2026
16	Sarmal	Indirect evidence	San Diego, CA, United StatesHQ checked Sep 13, 2026	11-50	11 contacts →
	Indirect evidence “Sarmal is a San Diego-based entrepreneurial research and development team developing breakthrough technologies in advanced nucleic acid sequencing and nucleic acid-based detection.” Source: RevenueBase Database · checked Sep 13, 2026
17	Biofluidica, INC	Indirect evidence	San Diego, CA, United StatesHQ checked Sep 13, 2026	11-50	8 contacts →
	Indirect evidence “BioFluidica® is a biotechnology company dedicated to eliminating obstacles to the adoption of liquid biopsy as a tool for researchers and clinicians.” Source: RevenueBase Database · checked Sep 13, 2026
18	Epigenome Technologies	Indirect evidence	San Diego, CA, United StatesHQ checked Sep 13, 2026	1-10	7 contacts →
	Indirect evidence “We specialize in single-cell multi-omics technologies to study the epigenome in normal and disease states.” Source: RevenueBase Database · checked Sep 13, 2026
19	Micropure Genomics INC	Indirect evidence	San Diego, CA, United StatesHQ checked Sep 13, 2026	1-10	6 contacts →
	Indirect evidence “MicroPure’s vision is to impove the quality of all lives by enabling genomic analysis anytime, anywhere & by anyone.” Source: RevenueBase Database · checked Sep 13, 2026
20	Molecular Stethoscope	Partial evidence	San Diego, CA, United StatesHQ checked Sep 13, 2026	11-50	6 contacts →
	Partial evidence “Molecular Stethoscope is an early stage, molecular diagnostics company engaged in transcriptomic research and development in San Diego, California.” Source: RevenueBase Database · checked Sep 13, 2026
21	Blazedx	Indirect evidence	San Diego, United StatesHQ checked Sep 13, 2026	1-10	5 contacts →
	Indirect evidence “Reagents, hardware, and services for translational research, focusing on qPCR applications.” Source: RevenueBase Database · checked Sep 13, 2026
22	Hygia Reagents INC	Indirect evidence	San Diego, CA, United StatesHQ checked Sep 13, 2026	1-10	5 contacts →
	Indirect evidence “Hygia Reagents is a San Diego–based GMP-ready CDMO specializing in custom media, buffers, reagents, and small-batch manufacturing for biotech, cell and gene therapy, and…” Source: RevenueBase Database · checked Sep 13, 2026
23	Socal Biosciences, INC	Indirect evidence	San Diego, CA, United StatesHQ checked Sep 13, 2026	1-10	5 contacts →
	Indirect evidence “At SoCal Biosciences, our mission is to support and pioneer advancements in the field of RNA and next-generation RNA therapeutics and vaccines.” Source: RevenueBase Database · checked Sep 13, 2026
24	Augenomics	Indirect evidence	San Diego, CA, United StatesHQ checked Sep 13, 2026	1-10	4 contacts →
	Indirect evidence “San-Diego Based Next Generation Sequencing Services.” Source: RevenueBase Database · checked Sep 13, 2026
25	Chaparral Labs	Indirect evidence	San Diego, CA, United StatesHQ checked Sep 13, 2026	1-10	4 contacts →
	Indirect evidence “At Chaparral Labs, we simplify and expedite the proteomics analysis process.” Source: RevenueBase Database · checked Sep 13, 2026

RevenueBase Smart Search

RevenueBase Smart Search assesses information from a company’s LinkedIn profile, information supplied directly by the company, its website, and other publicly available sources. It uses that information to rate how closely the company relates to this list’s category: transcriptomics software companies. Every row carries its rating and the description the rating was read from, so each one can be checked rather than taken on trust.

Strong evidence: The company's own public description of its business names transcriptomics software companies.
Partial evidence: Its own public description names part of transcriptomics software companies, so it works in or next to the category without describing itself that way.
Indirect evidence: The description shown does not name transcriptomics software companies. The match rests on the rest of the company's public profile rather than the one sentence quoted here, so this is the rating to check first.

RevenueBase Smart Search is how these lists are built: RevenueBase's data engine and AI assemble the companies that match a category defined in a user's own words, so a list can be about what companies actually do rather than about whichever industry code they were filed under.

Showing 25 of 49 transcriptomics software companies based in San Diego, United States

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Transcriptomics software companies based in San Diego, United States at a glance

As of Sep 13, 2026

48.3%Verified-email coverage

36.1%Mobile-number coverage

221.0Average contacts per company

11-50Median size (employees)

100.0%Largest-city concentration · San Diego

Sep 13, 2026Page data refreshed

Companies by employee count

1-10

11-50

51-200

201-500

5,001-10,000

Freshness & accuracy

How recently the business emails were verified and the company information checked

Email last verified

Median 15.0d

4,0490–30

1,03931–60

1761–90

190–180

125180+

Company record updated

Median 64.0d

00–30

5,27231–60

4,16861–90

85290–180

537180+

How this list was built

Company categories are rarely black and white. RevenueBase reads each company's own description of its business to decide whether it belongs among transcriptomics software companies, so some rows will be adjacent to the category rather than pure plays. The description and RevenueBase Smart Search rating on every row are there so you can check each match yourself.

Source: The RevenueBase company graph: 60 million companies and 398.9 million professional contacts resolved from primary sources, queried with RevenueBase Smart Search, the natural-language company search available to every RevenueBase user.
What qualifies: Companies headquartered in San Diego, United States whose own description of what they do matches “transcriptomics software companies”. Matching reads each company's description, not its industry code or its name.
RevenueBase Smart Search: RevenueBase Smart Search is how this list is assembled and how each row is rated. RevenueBase's data engine and AI assess a company's LinkedIn profile, information supplied directly by the company, its website and other publicly available information, then relate it to a category defined in a user's own words. Each row is rated strong evidence (its own description names transcriptomics software companies), partial evidence (it names part of the category) or indirect evidence (the description shown names none of it and the match rests on the rest of the company's profile). The description supporting each rating is quoted on the row.
What we exclude: Companies whose own description does not clearly place them among transcriptomics software companies, and records with no verified work email. Companies headquartered outside San Diego are excluded even when they keep an office there.
Match quality: In blind human judging of this matching method, 86% of matched companies were on target. Expect roughly 1 in 7 rows to be adjacent to the category rather than a pure play. Every row shows the company's own description and its RevenueBase Smart Search rating so you can judge each match yourself. Read the full methodology: how the lists are built, how the judging worked, and what the figure means.
Ranking: Team size, largest first: companies are ordered by the number of professionals RevenueBase tracks at each one. Employee ranges shown are reported bands, for context.
Verification: Every listed company carries at least one verified work email, 5,231 across the full list. Contacts re-verify on a rolling cadence, and each contact's own verification date is shown inside RevenueBase.
Refresh: This page's figures were pulled from the company graph on September 13, 2026. Lists refresh periodically as the graph is re-checked.
Corrections: Wrong category, wrong headquarters, or a company that has closed? Use “Report an issue” on any row. Reports go to the RevenueBase Data Team and feed back into the company graph.

Transcriptomics software companies by metro in the United States

Transcriptomics software companies in San Diego49

Frequently asked

What is RevenueBase Smart Search?

RevenueBase Smart Search is how RevenueBase decides which companies belong on this list and how strongly each one fits. Its data engine and AI assess a company's LinkedIn profile, information supplied directly by the company, its website and other publicly available information, then relate it to the category the list is about. Each row is rated strong evidence when the company's own description names transcriptomics software companies, partial evidence when it names part of the category, and indirect evidence when the description shown names none of it and the match rests on the rest of the company's profile.

How many transcriptomics software companies are there based in San Diego, United States?

RevenueBase identified 49 transcriptomics software companies headquartered in San Diego, United States as of September 2026, matched on each company's own description of what it does rather than its industry code.

What is the largest company on this list?

Illumina, headquartered in San Diego, tops this list with the largest team on record.

Which city has the most transcriptomics software companies?

San Diego leads with 49 headquartered companies, followed by Cambridge (22) and San Francisco (19).

How do I get contact information for these companies?

A free RevenueBase account lets you run this exact search and work the top results, verified emails and direct dials included. Upgrading unlocks all 5,231 verified decision-maker contacts tracked across these 49 companies.

How current is this list?

The list refreshes periodically as the company graph is re-checked. This page's figures were pulled on September 13, 2026.

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About this data

RevenueBase is a B2B data infrastructure company. Its company graph covers 60 million companies and 398.9 million professional contacts, with emails verified on a rolling cadence rather than scraped once and left to decay. These company lists are generated directly from that graph with RevenueBase Smart Search, the same natural-language company search every RevenueBase user has: describe a market in plain words, get the companies that match, and add verified emails and direct dials for the people at them. It is the same data that powers RevenueBase's B2B data products, and a free account includes 500 credits to start. How these lists are built and judged.