Company lists · Data refreshed September 2026
Top 25 Bioinformatics companies based in San Diego, United States
This directory lists 104 bioinformatics companies based in San Diego, United States, with 11,333 business contacts and 5,343 email addresses. Across the United States, San Diego is the largest hub for this category.
Bioinformatics companies develop software, databases, computational tools, and services for analyzing biological and biomedical data. This list covers companies that provide bioinformatics software, databases, computational analysis, data services, or related tools for biological and biomedical research. Ranked by team size, largest first. Data current as of September 19, 2026.
Published by RevenueBase, a B2B data infrastructure company. This list was built with RevenueBase Smart Search, the natural-language company search RevenueBase customers use to build their own targeted lists and unlock verified emails and direct dials at the companies on them. How these lists are built and judged.
The 25 largest bioinformatics companies based in San Diego, United States
Ranked by team size| # | Company | Contacts | |||
|---|---|---|---|---|---|
| 1 | 8,987 contacts → | ||||
Indirect evidence “At Illumina, our goal is to apply innovative technologies and revolutionary assays to the analysis of genetic variation and function, making studies possible that were not even…” Source: RevenueBase Database · checked Sep 19, 2026Thanks. The Data Team will review it. | |||||
| 2 | 183 contacts → | ||||
Indirect evidence “Bionano is a provider of genome analysis solutions that can enable researchers and clinicians to reveal answers to challenging questions in biology and medicine.” Source: RevenueBase Database · checked Sep 19, 2026Thanks. The Data Team will review it. | |||||
| 3 | 164 contacts → | ||||
Indirect evidence “Rancho BioSciences is an international fee for service data curation company with analysis and developer services.” Source: RevenueBase Database · checked Sep 19, 2026Thanks. The Data Team will review it. | |||||
| 4 | 135 contacts → | ||||
Indirect evidence “Agena Bioscience® empowers research laboratories worldwide to deliver scalable targeted genomic data.” Source: RevenueBase Database · checked Sep 19, 2026Thanks. The Data Team will review it. | |||||
| 5 | 115 contacts → | ||||
Indirect evidence “BPS Bioscience advances new scientific discoveries that lead to therapies by creating innovative solutions for research.” Source: RevenueBase Database · checked Sep 19, 2026Thanks. The Data Team will review it. | |||||
| 6 | 107 contacts → | ||||
Indirect evidence “Maravai brands set the standard in nucleic acid products and services, enzyme development, and biologics safety testing.” Source: RevenueBase Database · checked Sep 19, 2026Thanks. The Data Team will review it. | |||||
| 7 | 78 contacts → | ||||
Strong evidence “BioTuring is an innovative bioinformatics company based in San Diego.” Source: RevenueBase Database · checked Sep 19, 2026Thanks. The Data Team will review it. | |||||
| 8 | 70 contacts → | ||||
Strong evidence “Inocras is a bioinformatics-led company redefining precision health through whole genome data and proprietary analytics.” Source: RevenueBase Database · checked Sep 19, 2026Thanks. The Data Team will review it. | |||||
| 9 | 67 contacts → | ||||
Indirect evidence “Sapient is a leader in multi-omics data generation and insight delivery, providing bespoke services for proteomics, metabolomics, and lipidomics that enable biopharma sponsors to…” Source: RevenueBase Database · checked Sep 19, 2026Thanks. The Data Team will review it. | |||||
| 10 | 61 contacts → | ||||
Indirect evidence “Telesis Bio is empowering researchers to accelerate the creation of novel synthetic biology solutions to address some of humanity’s greatest challenges.” Source: RevenueBase Database · checked Sep 19, 2026Thanks. The Data Team will review it. | |||||
| 11 | 55 contacts → | ||||
Indirect evidence “Eton Bioscience Inc.” Source: RevenueBase Database · checked Sep 19, 2026Thanks. The Data Team will review it. | |||||
| 12 | 50 contacts → | ||||
Indirect evidence “Certis Oncology is transforming how oncology R&D decisions are made.” Source: RevenueBase Database · checked Sep 19, 2026Thanks. The Data Team will review it. | |||||
| 13 | 49 contacts → | ||||
Indirect evidence “Eclipsebio develops first-in-class technologies, analyses, and platforms for the development of tomorrow’s RNA-based and RNA-targeting therapies.” Source: RevenueBase Database · checked Sep 19, 2026Thanks. The Data Team will review it. | |||||
| 14 | 47 contacts → | ||||
Indirect evidence “iBio is a cutting-edge biotech company leveraging AI and advanced computational biology to develop next-generation biopharmaceuticals for cardiometabolic and cardiopulmonary…” Source: RevenueBase Database · checked Sep 19, 2026Thanks. The Data Team will review it. | |||||
| 15 | 46 contacts → | ||||
Indirect evidence “Affymetrix including eBioscience, an Affymetrix company, works to integrate genomics, proteomics, and pathways biology for the development of personalized medicine.” Source: RevenueBase Database · checked Sep 19, 2026Thanks. The Data Team will review it. | |||||
| 16 | 44 contacts → | ||||
Indirect evidence Source: RevenueBase Database · checked Sep 19, 2026Thanks. The Data Team will review it. | |||||
| 17 | 33 contacts → | ||||
Indirect evidence “Blackthorn delivers AI agents for pharma and life sciences teams that need more than generic automation.” Source: RevenueBase Database · checked Sep 19, 2026Thanks. The Data Team will review it. | |||||
| 18 | 30 contacts → | ||||
Indirect evidence “Allele Biotechnology and Pharmaceuticals, Inc.” Source: RevenueBase Database · checked Sep 19, 2026Thanks. The Data Team will review it. | |||||
| 19 | 29 contacts → | ||||
Indirect evidence “Zafrens is a therapeutics company pioneering an ultra-high throughput platform to isolate, culture, image, and sequence millions of cells per day.” Source: RevenueBase Database · checked Sep 19, 2026Thanks. The Data Team will review it. | |||||
| 20 | 24 contacts → | ||||
Indirect evidence “A Novel Biomarker Discovery Solution for Personalized Drug Development Denovo Biopharma is a private San Diego based biotech company providing a novel biomarker solution to…” Source: RevenueBase Database · checked Sep 19, 2026Thanks. The Data Team will review it. | |||||
| 21 | 22 contacts → | ||||
Indirect evidence “We are a San Diego Life Science Company supporting the Gene and Cell Therapy industry by providing one-stop custom NGS and Flow Cytometry Solutions, from assay design to data…” Source: RevenueBase Database · checked Sep 19, 2026Thanks. The Data Team will review it. | |||||
| 22 | 19 contacts → | ||||
Indirect evidence “Alida Biosciences is developing the next generation of RNA analysis tools to enable new medical treatments and diagnostic assays.” Source: RevenueBase Database · checked Sep 19, 2026Thanks. The Data Team will review it. | |||||
| 23 | 17 contacts → | ||||
Indirect evidence “EZ Labs LLC is a privately owned cGMP compliant analytical laboratory in the heart of San Diego’s thriving biotech community.” Source: RevenueBase Database · checked Sep 19, 2026Thanks. The Data Team will review it. | |||||
| 24 | 15 contacts → | ||||
Indirect evidence “Yatiri Bio was created to address the inefficiencies of cancer drug discovery and development, focusing on the translational gap between discovery and clinical success.” Source: RevenueBase Database · checked Sep 19, 2026Thanks. The Data Team will review it. | |||||
| 25 | 12 contacts → | ||||
Indirect evidence “Partek Incorporated, an Illumina provides analysis software and services for life sciences research and specializes in innovative solutions for integrated genomics, big data, and…” Source: RevenueBase Database · checked Sep 19, 2026Thanks. The Data Team will review it. | |||||
RevenueBase Smart Search
RevenueBase Smart Search assesses information from a company’s LinkedIn profile, information supplied directly by the company, its website, and other publicly available sources. It uses that information to rate how closely the company relates to this list’s category: bioinformatics companies. Every row carries its rating and the description the rating was read from, so each one can be checked rather than taken on trust.
- Strong evidence
- The company's own public description of its business names bioinformatics companies.
- Partial evidence
- Its own public description names part of bioinformatics companies, so it works in or next to the category without describing itself that way.
- Indirect evidence
- The description shown does not name bioinformatics companies. The match rests on the rest of the company's public profile rather than the one sentence quoted here, so this is the rating to check first.
RevenueBase Smart Search is how these lists are built: RevenueBase's data engine and AI assemble the companies that match a category defined in a user's own words, so a list can be about what companies actually do rather than about whichever industry code they were filed under.
Showing 25 of 104 bioinformatics companies based in San Diego, United States
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Bioinformatics companies based in San Diego, United States at a glance
As of Sep 19, 2026Companies by employee count
Email recency for this list is measured across the whole United States list rather than for San Diego, so it is reported there. Company counts and contact totals on this page are exact for San Diego, over 104 companies.
How this list was built
Company categories are rarely black and white. RevenueBase reads each company's own description of its business to decide whether it belongs among bioinformatics companies, so some rows will be adjacent to the category rather than pure plays. The description and RevenueBase Smart Search rating on every row are there so you can check each match yourself.
- Source
- The RevenueBase company graph: 60 million companies and 398.9 million professional contacts resolved from primary sources, queried with RevenueBase Smart Search, the natural-language company search available to every RevenueBase user.
- What qualifies
- Companies headquartered in San Diego, United States whose own description of what they do matches “bioinformatics companies”. Matching reads each company's description, not its industry code or its name.
- RevenueBase Smart Search
- RevenueBase Smart Search is how this list is assembled and how each row is rated. RevenueBase's data engine and AI assess a company's LinkedIn profile, information supplied directly by the company, its website and other publicly available information, then relate it to a category defined in a user's own words. Each row is rated strong evidence (its own description names bioinformatics companies), partial evidence (it names part of the category) or indirect evidence (the description shown names none of it and the match rests on the rest of the company's profile). The description supporting each rating is quoted on the row.
- What we exclude
- Companies whose own description does not clearly place them among bioinformatics companies, and records with no verified work email. Companies headquartered outside San Diego are excluded even when they keep an office there.
- Match quality
- In blind human judging of this matching method, 86% of matched companies were on target. Expect roughly 1 in 7 rows to be adjacent to the category rather than a pure play. Every row shows the company's own description and its RevenueBase Smart Search rating so you can judge each match yourself. Read the full methodology: how the lists are built, how the judging worked, and what the figure means.
- Ranking
- Team size, largest first: companies are ordered by the number of professionals RevenueBase tracks at each one. Employee ranges shown are reported bands, for context.
- Verification
- Every listed company carries at least one verified work email, 5,343 across the full list. Contacts re-verify on a rolling cadence, and each contact's own verification date is shown inside RevenueBase.
- Refresh
- This page's figures were pulled from the company graph on September 19, 2026. Lists refresh periodically as the graph is re-checked.
- Corrections
- Wrong category, wrong headquarters, or a company that has closed? Use “Report an issue” on any row. Reports go to the RevenueBase Data Team and feed back into the company graph.
Bioinformatics companies by metro in the United States
Frequently asked
How many bioinformatics companies are in the directory?
The directory contains 104 bioinformatics companies based in San Diego, United States as of September 2026.
What do bioinformatics companies do?
Bioinformatics companies provide computational tools, software, databases, and services for organizing and analyzing biological and biomedical data.
Which city in the United States has the most bioinformatics companies?
San Diego leads the United States with 104 headquartered companies, followed by Boston (66) and San Francisco (57).
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About this data
RevenueBase is a B2B data infrastructure company. Its company graph covers 60 million companies and 398.9 million professional contacts, with emails verified on a rolling cadence rather than scraped once and left to decay. These company lists are generated directly from that graph with RevenueBase Smart Search, the same natural-language company search every RevenueBase user has: describe a market in plain words, get the companies that match, and add verified emails and direct dials for the people at them. It is the same data that powers RevenueBase's B2B data products, and a free account includes 500 credits to start. How these lists are built and judged.
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