Company lists · Data refreshed September 2026

Top 25 Bioinformatics companies based in San Diego, United States

This directory lists 103 bioinformatics companies based in San Diego, United States, with 11,332 business contacts and 5,343 email addresses. As of September 2026, San Diego is the single most-represented city among the companies listed.

Bioinformatics companies develop software, databases, computational tools, and services for analyzing biological and biomedical data. This list covers companies that provide bioinformatics software, databases, computational analysis, data services, or related tools for biological and biomedical research. Ranked by team size, largest first. Data current as of September 7, 2026.

Published by RevenueBase, a B2B data infrastructure company. This list was built with RevenueBase Smart Search, the natural-language company search RevenueBase customers use to build their own targeted lists and unlock verified emails and direct dials at the companies on them. How these lists are built and judged.

How to read this list HQ checked on every row RevenueBase Smart Search rating on every row Refreshed Sep 7, 2026 86% judged on-target in blind review
103Companies
11,332Contacts tracked
5,343Verified emails
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The 25 largest bioinformatics companies based in San Diego, United States

Ranked by team size
Top 25 of 103 bioinformatics companies based in San Diego, United States, ranked by team size, largest first. Data refreshed Sep 7, 2026. RevenueBase Smart Search rates how each company's information relates to bioinformatics companies: strong evidence (its own description names it), partial (names part of it), indirect (matched on the rest of its profile rather than the description shown). Click a contact count to view that company's people.
#CompanyRevenueBase Smart SearchHeadquartersEmployeesContacts
1Indirect evidenceSan Diego, CA, United StatesHQ checked Sep 7, 20265,001-10,0008,987 contacts →

“At Illumina, our goal is to apply innovative technologies and revolutionary assays to the analysis of genetic variation and function, making studies possible that were not even…”

Source: company website · checked Sep 7, 2026
2Indirect evidenceSan Diego, CA, United StatesHQ checked Sep 7, 2026201-500183 contacts →

“Bionano is a provider of genome analysis solutions that can enable researchers and clinicians to reveal answers to challenging questions in biology and medicine.”

Source: company website · checked Sep 7, 2026
3Indirect evidenceSan Diego, CA, United StatesHQ checked Sep 7, 202651-200164 contacts →

“Rancho BioSciences is an international fee for service data curation company with analysis and developer services.”

Source: company website · checked Sep 7, 2026
4Indirect evidenceSan Diego, CA, United StatesHQ checked Sep 7, 202651-200135 contacts →

“Agena Bioscience® empowers research laboratories worldwide to deliver scalable targeted genomic data.”

Source: company website · checked Sep 7, 2026
5Indirect evidenceSan Diego, CA, United StatesHQ checked Sep 7, 202651-200115 contacts →

“BPS Bioscience advances new scientific discoveries that lead to therapies by creating innovative solutions for research.”

Source: company website · checked Sep 7, 2026
6Indirect evidenceSan Diego, CA, United StatesHQ checked Sep 7, 2026501-1,000107 contacts →

“Maravai brands set the standard in nucleic acid products and services, enzyme development, and biologics safety testing.”

Source: company website · checked Sep 7, 2026
7Strong evidenceSan Diego, CA, United StatesHQ checked Sep 7, 202651-20078 contacts →

“BioTuring is an innovative bioinformatics company based in San Diego.”

Source: company website · checked Sep 7, 2026
8Strong evidenceSan Diego, CA, United StatesHQ checked Sep 7, 202611-5070 contacts →

“Inocras is a bioinformatics-led company redefining precision health through whole genome data and proprietary analytics.”

Source: company website · checked Sep 7, 2026
9Indirect evidenceSan Diego, CA, United StatesHQ checked Sep 7, 202651-20067 contacts →

“Sapient is a leader in multi-omics data generation and insight delivery, providing bespoke services for proteomics, metabolomics, and lipidomics that enable biopharma sponsors to…”

Source: company website · checked Sep 7, 2026
10Indirect evidenceSan Diego, CA, United StatesHQ checked Sep 7, 202651-20061 contacts →

“Telesis Bio is empowering researchers to accelerate the creation of novel synthetic biology solutions to address some of humanity’s greatest challenges.”

Source: company website · checked Sep 7, 2026
11Indirect evidenceSan Diego, CA, United StatesHQ checked Sep 7, 202651-20055 contacts →

“Eton Bioscience Inc.”

Source: company website · checked Sep 7, 2026
12Indirect evidenceSan Diego, CA, United StatesHQ checked Sep 7, 202611-5050 contacts →

“Certis Oncology is transforming how oncology R&D decisions are made.”

Source: company website · checked Sep 7, 2026
13Indirect evidenceSan Diego, CA, United StatesHQ checked Sep 7, 202611-5049 contacts →

“Eclipsebio develops first-in-class technologies, analyses, and platforms for the development of tomorrow’s RNA-based and RNA-targeting therapies.”

Source: company website · checked Sep 7, 2026
14Indirect evidenceSan Diego, CA, United StatesHQ checked Sep 7, 202611-5047 contacts →

“iBio is a cutting-edge biotech company leveraging AI and advanced computational biology to develop next-generation biopharmaceuticals for cardiometabolic and cardiopulmonary…”

Source: company website · checked Sep 7, 2026
15Indirect evidenceSan Diego, CA, United StatesHQ checked Sep 7, 20261,001-5,00046 contacts →

“Affymetrix including eBioscience, an Affymetrix company, works to integrate genomics, proteomics, and pathways biology for the development of personalized medicine.”

Source: company website · checked Sep 7, 2026
16Indirect evidenceSan Diego, CA, United StatesHQ checked Sep 7, 202611-5044 contacts →
Source: company website · checked Sep 7, 2026
17Indirect evidenceSan Diego, CA, United StatesHQ checked Sep 7, 202611-5033 contacts →

“Blackthorn delivers AI agents for pharma and life sciences teams that need more than generic automation.”

Source: company website · checked Sep 7, 2026
18Indirect evidenceSan Diego, CA, United StatesHQ checked Sep 7, 202611-5030 contacts →

“Allele Biotechnology and Pharmaceuticals, Inc.”

Source: company website · checked Sep 7, 2026
19Indirect evidenceSan Diego, CA, United StatesHQ checked Sep 7, 202611-5029 contacts →

“Zafrens is a therapeutics company pioneering an ultra-high throughput platform to isolate, culture, image, and sequence millions of cells per day.”

Source: company website · checked Sep 7, 2026
20Indirect evidenceSan Diego, CA, United StatesHQ checked Sep 7, 202611-5024 contacts →

“A Novel Biomarker Discovery Solution for Personalized Drug Development Denovo Biopharma is a private San Diego based biotech company providing a novel biomarker solution to…”

Source: company website · checked Sep 7, 2026
21Indirect evidenceSan Diego, CA, United StatesHQ checked Sep 7, 202611-5022 contacts →

“We are a San Diego Life Science Company supporting the Gene and Cell Therapy industry by providing one-stop custom NGS and Flow Cytometry Solutions, from assay design to data…”

Source: company website · checked Sep 7, 2026
22Indirect evidenceSan Diego, United StatesHQ checked Sep 7, 202611-5019 contacts →

“Alida Biosciences is developing the next generation of RNA analysis tools to enable new medical treatments and diagnostic assays.”

Source: company website · checked Sep 7, 2026
23Indirect evidenceSan Diego, CA, United StatesHQ checked Sep 7, 202611-5017 contacts →

“EZ Labs LLC is a privately owned cGMP compliant analytical laboratory in the heart of San Diego’s thriving biotech community.”

Source: company website · checked Sep 7, 2026
24Indirect evidenceSan Diego, CA, United StatesHQ checked Sep 7, 20261-1015 contacts →

“Yatiri Bio was created to address the inefficiencies of cancer drug discovery and development, focusing on the translational gap between discovery and clinical success.”

Source: company website · checked Sep 7, 2026
25Indirect evidenceSan Diego, CA, United StatesHQ checked Sep 7, 202611-5012 contacts →

“Partek Incorporated, an Illumina provides analysis software and services for life sciences research and specializes in innovative solutions for integrated genomics, big data, and…”

Source: company website · checked Sep 7, 2026

Showing 25 of 103 bioinformatics companies based in San Diego, United States

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Bioinformatics companies based in San Diego, United States at a glance

As of Sep 7, 2026
47.1%Verified-email coverage
110.0Average contacts per company
11-50Median size (employees)
100.0%Largest-city concentration · San Diego
Sep 7, 2026Page data refreshed

Companies by employee count

1-10
50
11-50
35
51-200
13
201-500
2
501-1,000
1
1,001-5,000
1
5,001-10,000
1

Email recency for this list is measured across the whole United States list rather than this city, so it is reported there. Company counts and contact totals on this page are exact for San Diego, over 103 companies.

How this list was built

Company categories are rarely black and white. RevenueBase reads each company's own description of its business to decide whether it belongs among bioinformatics companies, so some rows will be adjacent to the category rather than pure plays. The description and RevenueBase Smart Search rating on every row are there so you can check each match yourself.

Source
The RevenueBase company graph: 60 million companies and 398.9 million professional contacts resolved from primary sources, queried with RevenueBase Smart Search, the natural-language company search available to every RevenueBase user.
What qualifies
Companies headquartered in San Diego, United States whose own description of what they do matches “bioinformatics companies”. Matching reads each company's description, not its industry code or its name.
RevenueBase Smart Search
RevenueBase Smart Search is how this list is assembled and how each row is rated. RevenueBase's data engine and AI assess a company's LinkedIn profile, information supplied directly by the company, its website and other publicly available information, then relate it to a category defined in a user's own words. Each row is rated strong evidence (its own description names bioinformatics companies), partial evidence (it names part of the category) or indirect evidence (the description shown names none of it and the match rests on the rest of the company's profile). The description supporting each rating is quoted on the row.
What we exclude
Companies whose own description does not clearly place them among bioinformatics companies, and records with no verified work email. Companies headquartered outside San Diego are excluded even when they keep an office there.
Match quality
In blind human judging of this matching method, 86% of matched companies were on target. Expect roughly 1 in 7 rows to be adjacent to the category rather than a pure play. Every row shows the company's own description and its RevenueBase Smart Search rating so you can judge each match yourself. Read the full methodology: how the lists are built, how the judging worked, and what the figure means.
Ranking
Team size, largest first: companies are ordered by the number of professionals RevenueBase tracks at each one. Employee ranges shown are reported bands, for context.
Verification
Every listed company carries at least one verified work email, 5,343 across the full list. Contacts re-verify on a rolling cadence, and each contact's own verification date is shown inside RevenueBase.
Refresh
This page's figures were pulled from the company graph on September 7, 2026. Lists refresh periodically as the graph is re-checked.
Corrections
Wrong category, wrong headquarters, or a company that has closed? Use “Report an issue” on any row. Reports go to the RevenueBase Data Team and feed back into the company graph.

Frequently asked

How many bioinformatics companies are in the directory?

The directory contains 103 bioinformatics companies based in San Diego, United States as of September 2026.

What do bioinformatics companies do?

Bioinformatics companies provide computational tools, software, databases, and services for organizing and analyzing biological and biomedical data.

Which city has the most bioinformatics companies?

San Diego is the single most-represented city among the bioinformatics companies in this directory.

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About this data

RevenueBase is a B2B data infrastructure company. Its company graph covers 60 million companies and 398.9 million professional contacts, with emails verified on a rolling cadence rather than scraped once and left to decay. These company lists are generated directly from that graph with RevenueBase Smart Search, the same natural-language company search every RevenueBase user has: describe a market in plain words, get the companies that match, and add verified emails and direct dials for the people at them. It is the same data that powers RevenueBase's B2B data products, and a free account includes 500 credits to start. How these lists are built and judged.