Company lists · Data refreshed September 2026

Top 21 Single cell analysis software companies based in San Diego, United States

RevenueBase identified 34 company matches for single cell analysis software companies associated with San Diego, United States as of September 2026 and tracks 983 professional contacts across them, including 304 with verified work emails and 394 with mobile numbers. Across the United States, San Diego is the largest hub for this category.

This list covers company matches for single cell analysis software companies associated with San Diego, United States, found by RevenueBase SmartSearch using the meaning of business descriptions in its company graph at Exact. Ranked by professionals tracked, largest first. Rows show recorded descriptions where available, Exact search membership and the snapshot date. Data refreshed September 13, 2026.

Published by RevenueBase, a B2B data infrastructure company. This list was built with RevenueBase SmartSearch, the natural-language company search RevenueBase customers use to build their own targeted lists and unlock verified emails and direct dials at the companies on them. How these lists are built and judged.

How to read this list RevenueBase SmartSearch · Exact Recorded Sep 13, 2026 How this list was built
34Companies
983Contacts tracked
304Verified emails
394Mobile numbers
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The 21 largest single cell analysis software companies based in San Diego, United States

Ranked by team size
Top 21 of 34 company matches for single cell analysis software companies based in San Diego, United States, ordered by professional contacts tracked in RevenueBase, largest first. Recorded Sep 13, 2026. The RevenueBase SmartSearch column shows Exact match membership in this saved search. Click a contact count to view that company's people. Totals use company locations recorded by RevenueBase; the displayed preview is a smaller selection.
#CompanyRevenueBase SmartSearchHeadquartersEmployeesContacts
1Exact matchSan Diego, CA, United StatesHQ recorded Sep 13, 202651-200135 contacts →

Exact match

“Agena Bioscience® empowers research laboratories worldwide to deliver scalable targeted genomic data.”

Recorded in the RevenueBase company graph · Sep 13, 2026 · View company records in RevenueBase
2Exact matchSan Diego, CA, United StatesHQ recorded Sep 13, 202651-20078 contacts →

Exact match

“BioTuring is an innovative bioinformatics company based in San Diego.”

Recorded in the RevenueBase company graph · Sep 13, 2026 · View company records in RevenueBase
3Exact matchSan Diego, CA, United StatesHQ recorded Sep 13, 202651-20046 contacts →

Exact match

“NanoCellect is committed to empowering every scientist to make discoveries one cell at a time, by ensuring high cell viability required to advance cell-based research.”

Recorded in the RevenueBase company graph · Sep 13, 2026 · View company records in RevenueBase
4Exact matchSan Diego, CA, United StatesHQ recorded Sep 13, 2026501-1,00045 contacts →

Exact match

“Follow us for regular updates on cell analysis technology news, events, and more.”

Recorded in the RevenueBase company graph · Sep 13, 2026 · View company records in RevenueBase
5Exact matchSan Diego, CA, United StatesHQ recorded Sep 13, 202611-5044 contacts →

Exact match

Recorded description not available.

Recorded in the RevenueBase company graph · Sep 13, 2026 · View company records in RevenueBase
6Exact matchSan Diego, CA, United StatesHQ recorded Sep 13, 202611-5029 contacts →

Exact match

“Zafrens is a therapeutics company pioneering an ultra-high throughput platform to isolate, culture, image, and sequence millions of cells per day.”

Recorded in the RevenueBase company graph · Sep 13, 2026 · View company records in RevenueBase
7Exact matchSan Diego, CA, United StatesHQ recorded Sep 13, 202611-5025 contacts →

Exact match

“Vala Sciences helps researchers achieve an unrivaled in vitro understanding of how human cells respond to drug compounds.”

Recorded in the RevenueBase company graph · Sep 13, 2026 · View company records in RevenueBase
8Exact matchSan Diego, CA, United StatesHQ recorded Sep 13, 202611-5022 contacts →

Exact match

“We are a San Diego Life Science Company supporting the Gene and Cell Therapy industry by providing one-stop custom NGS and Flow Cytometry Solutions, from assay design to data…”

Recorded in the RevenueBase company graph · Sep 13, 2026 · View company records in RevenueBase
9Exact matchSan Diego, United StatesHQ recorded Sep 13, 202611-5019 contacts →

Exact match

“Alida Biosciences is developing the next generation of RNA analysis tools to enable new medical treatments and diagnostic assays.”

Recorded in the RevenueBase company graph · Sep 13, 2026 · View company records in RevenueBase
10Exact matchSan Diego, CA, United StatesHQ recorded Sep 13, 202611-5012 contacts →

Exact match

“Partek Incorporated, an Illumina provides analysis software and services for life sciences research and specializes in innovative solutions for integrated genomics, big data, and…”

Recorded in the RevenueBase company graph · Sep 13, 2026 · View company records in RevenueBase
11Exact matchSan Diego, CA, United StatesHQ recorded Sep 13, 202611-5011 contacts →

Exact match

“Sarmal is a San Diego-based entrepreneurial research and development team developing breakthrough technologies in advanced nucleic acid sequencing and nucleic acid-based detection.”

Recorded in the RevenueBase company graph · Sep 13, 2026 · View company records in RevenueBase
12Exact matchSan Diego, CA, United StatesHQ recorded Sep 13, 202611-509 contacts →

Exact match

“QBI engineers customized, multiplexed biosensors and immunoassays with applications in pharmaceutical process control, water quality monitoring, diagnostics, and industrial…”

Recorded in the RevenueBase company graph · Sep 13, 2026 · View company records in RevenueBase
13Exact matchSan Diego, CA, United StatesHQ recorded Sep 13, 202611-508 contacts →

Exact match

“BioFluidica® is a biotechnology company dedicated to eliminating obstacles to the adoption of liquid biopsy as a tool for researchers and clinicians.”

Recorded in the RevenueBase company graph · Sep 13, 2026 · View company records in RevenueBase
14Exact matchSan Diego, CA, United StatesHQ recorded Sep 13, 202611-508 contacts →

Exact match

“Reveal Biosciences is a computational pathology company combining traditional histopathology with artificial intelligence to transform tissue biology into actionable data.”

Recorded in the RevenueBase company graph · Sep 13, 2026 · View company records in RevenueBase
15Exact matchSan Diego, CA, United StatesHQ recorded Sep 13, 20261-107 contacts →

Exact match

“We specialize in single-cell multi-omics technologies to study the epigenome in normal and disease states.”

Recorded in the RevenueBase company graph · Sep 13, 2026 · View company records in RevenueBase
16Exact matchSan Diego, CA, United StatesHQ recorded Sep 13, 202611-506 contacts →

Exact match

“Molecular Stethoscope is an early stage, molecular diagnostics company engaged in transcriptomic research and development in San Diego, California.”

Recorded in the RevenueBase company graph · Sep 13, 2026 · View company records in RevenueBase
17Exact matchSan Diego, CA, United StatesHQ recorded Sep 13, 20261-104 contacts →

Exact match

“At Chaparral Labs, we simplify and expedite the proteomics analysis process.”

Recorded in the RevenueBase company graph · Sep 13, 2026 · View company records in RevenueBase
18Exact matchSan Diego, CA, United StatesHQ recorded Sep 13, 20261-102 contacts →

Exact match

“Animantis is advancing computational biology through next-generation computer vision solutions that decode complex cellular behavior at the single-cell level.”

Recorded in the RevenueBase company graph · Sep 13, 2026 · View company records in RevenueBase
19Exact matchSan Diego, CA, United StatesHQ recorded Sep 13, 20261-102 contacts →

Exact match

“Cell IDx was founded to be the technology leader in multiplexed cellular immunodiagnostics.”

Recorded in the RevenueBase company graph · Sep 13, 2026 · View company records in RevenueBase
20Exact matchSan Diego, CA, United StatesHQ recorded Sep 13, 20261-101 contacts →

Exact match

“Cellarcus is a funded entrepreneurial organization led by internationally recognized researchers and industry veterans.”

Recorded in the RevenueBase company graph · Sep 13, 2026 · View company records in RevenueBase
21Exact matchSan Diego, CA, United StatesHQ recorded Sep 13, 20261-101 contacts →

Exact match

“Founded by scientists from University of California, San Diego in 2015, Genemo is a biotech company focusing on developing and driving the commercialization of a brand new RNA…”

Recorded in the RevenueBase company graph · Sep 13, 2026 · View company records in RevenueBase

Showing 21 of 34 single cell analysis software companies based in San Diego, United States

See the full list, filter by size, metro and specialty, and access 304 tracked professional contacts with verified work emails. Direct dials are available where recorded.

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Single cell analysis software companies based in San Diego, United States at a glance

As of Sep 13, 2026
30.9%Verified-email coverage
40.1%Mobile-number coverage
28.9Average contacts per company
11-50Median size (employees)
Sep 13, 2026Page data refreshed

Companies by employee count

1-10
15
11-50
12
51-200
5
201-500
1
501-1,000
1

Freshness & accuracy

How recently the business emails were verified and the company information checked

Email last verified

Median 16.0d

Company record updated

Median 52.0d

How this list was built

The recorded descriptions help you assess these company matches. Check a company’s website for its current services and locations.

Source
The RevenueBase company graph: 60 million companies and 398.9 million professional contacts resolved from primary sources, queried with RevenueBase SmartSearch, the natural-language company search available to every RevenueBase user.
What qualifies
Company records associated with San Diego, United States whose business descriptions match “single cell analysis software companies” by meaning at the Exact setting. Descriptions are compiled in the RevenueBase company graph from public websites, profiles and company information where available; they are not guaranteed quotations from the company's website.
RevenueBase SmartSearch
Describe a niche company in your own words to find businesses by meaning. Exact, Similar, Related and Broad control the breadth of RevenueBase SmartSearch. This saved list uses Exact. Each row's Exact match badge shows inclusion in that search, not an individual score or a service-quality judgment.
Public preview
The public preview omits records without a verified work email. Where headquarters information is recorded, preview rows are also filtered to this page’s location. Dataset totals and geographic summaries describe the full matched records before these preview filters.
Match quality
RevenueBase's August 25, 2026 study assessed 4,198 description/company pairs across matching settings. The publisher reports 86% good or better at Exact. This evaluates the method across queries; it does not audit this individual list. Recorded company descriptions, where available, help you judge each match yourself. Read the full methodology: how the lists are built and what the study measures.
Ranking
Team size, largest first: companies are ordered by the number of professionals RevenueBase tracks at each one. Employee ranges shown are reported bands, for context.
Verification
Every displayed company carries at least one verified work email. RevenueBase tracks 304 professional contacts with verified work emails across the full matched dataset. Contacts re-verify on a rolling cadence, and each contact's own verification date is shown inside RevenueBase.
Refresh
This page's figures were pulled from the company graph on September 13, 2026. Lists refresh periodically as the graph is re-checked.
Record context
Company records and descriptions can change. Check the company's website for its current services and locations.

Frequently asked

What is RevenueBase SmartSearch?

RevenueBase SmartSearch finds niche companies by the meaning of their business descriptions in the RevenueBase company graph. Exact, Similar, Related and Broad control how closely companies must fit your description. This list uses Exact for “single cell analysis software companies”; each Exact match badge shows search membership, not an individual similarity or quality score.

How many single cell analysis software companies are there based in San Diego, United States?

RevenueBase identified 34 company matches for single cell analysis software companies associated with San Diego, United States as of September 2026, using the meaning of business descriptions at Exact. This is the recorded matched set in the RevenueBase company graph.

What is the largest company on this list?

Agena Bioscience tops the displayed preview by professional contacts tracked in RevenueBase. Recorded headquarters appear in the company rows.

Which city in the United States has the most single cell analysis software companies?

San Diego leads the United States with 27 company records, followed by Boston (22) and San Francisco (20).

How do I get contact information for these companies?

A free RevenueBase account lets you run this exact search and work limited free results with 500 credits to start. Upgrading provides access to the 304 professional contacts with verified work emails tracked across these 34 companies; direct dials are available where recorded.

How current is this list?

The list refreshes periodically as the company graph is re-checked. This page's figures were pulled on September 13, 2026.

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About this data

RevenueBase is a B2B data infrastructure company. Its company graph covers 60 million companies and 398.9 million professional contacts, with emails verified on a rolling cadence rather than scraped once and left to decay. These company lists are generated directly from that graph with RevenueBase SmartSearch, the same natural-language company search every RevenueBase user has: describe a market in plain words, get the companies that match, and add verified emails and direct dials for the people at them. It is the same data that powers RevenueBase's B2B data products, and a free account includes 500 credits to start. How these lists are built and judged.