Company lists · Data refreshed September 2026

Top 25 Sequence analysis software companies based in the United States

RevenueBase identified 121 sequence analysis software companies headquartered in the United States as of September 2026 and tracks 2,483 professional contacts across them, including 1,164 with verified work emails. San Francisco is the largest hub.

This list covers sequence analysis software companies headquartered in the United States, matched on what each company actually does as described in its own words. Ranked by team size, largest first. Every row shows the company's own description, its RevenueBase Smart Search rating, and when it was last checked. Data refreshed September 29, 2026.

Published by RevenueBase, a B2B data infrastructure company. This list was built with RevenueBase Smart Search, the natural-language company search RevenueBase customers use to build their own targeted lists and unlock verified emails and direct dials at the companies on them. How these lists are built and judged.

How to read this list HQ checked on every row RevenueBase Smart Search rating on every row Refreshed Sep 29, 2026 86% judged on-target in blind review
121Companies
2,483Contacts tracked
1,164Verified emails
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The 25 largest sequence analysis software companies based in the United States

Ranked by team size
Top 25 of 121 sequence analysis software companies based in the United States, ranked by team size, largest first. Data refreshed Sep 29, 2026. RevenueBase Smart Search rates how each company's information relates to sequence analysis software companies: strong evidence (its own description names it), partial (names part of it), indirect (matched on the rest of its profile rather than the description shown). Click a contact count to view that company's people.
#CompanyRevenueBase Smart SearchHeadquartersEmployeesContacts
1Indirect evidenceMenlo Park, CA, United StatesHQ checked Sep 29, 2026501-1,000636 contacts →

Indirect evidence

“At PacBio, we’re devoted to empowering you.”

Source: RevenueBase Database · checked Sep 29, 2026
2Indirect evidenceBoulder, CO, United StatesHQ checked Sep 29, 202651-200228 contacts →

Indirect evidence

“Watchmaker Genomics is a biotechnology company that specializes in advanced enzymology to develop precision tools for life sciences.”

Source: RevenueBase Database · checked Sep 29, 2026
3Indirect evidenceSan Jose, CA, United StatesHQ checked Sep 29, 2026201-500227 contacts →

Indirect evidence

“Complete Genomics is a pioneering life sciences company, headquartered in San Jose, California.”

Source: RevenueBase Database · checked Sep 29, 2026
4Indirect evidenceSan Diego, CA, United StatesHQ checked Sep 29, 202651-20078 contacts →

Indirect evidence

“BioTuring is an innovative bioinformatics company based in San Diego.”

Source: RevenueBase Database · checked Sep 29, 2026
5Partial evidenceSan Carlos, CA, United StatesHQ checked Sep 29, 202651-20076 contacts →

Partial evidence

“Clear Labs harnesses the power of next-generation sequencing (NGS) to simplify complex diagnostics for clinical and applied markets.”

Source: RevenueBase Database · checked Sep 29, 2026
6Strong evidenceBoston, MA, United StatesHQ checked Sep 29, 202651-20059 contacts →

Strong evidence

“Protein Metrics' vendor-neutral software allows scientists to use data generated on analytical instruments like mass spectrometers to quickly identify and report protein sequences…”

Source: RevenueBase Database · checked Sep 29, 2026
7Partial evidenceMadison, WI, United StatesHQ checked Sep 29, 202651-20050 contacts →

Partial evidence

“Genome International is a Bio-IT company that provides innovative software products and services in clinical genomics and Information Technology.”

Source: RevenueBase Database · checked Sep 29, 2026
8Partial evidenceWheeling, IL, United StatesHQ checked Sep 29, 202611-5037 contacts →

Partial evidence

“Founded in 1993, ACGT is a DNA sequencing and molecular biology provider with services in high throughput Sanger sequencing, NGS and genomics, bioinformatics, genotyping, qPCR…”

Source: RevenueBase Database · checked Sep 29, 2026
9Indirect evidenceAtlanta, GA, United StatesHQ checked Sep 29, 202611-5033 contacts →

Indirect evidence

“Otogenetics Corporation is a privately-held company established in 2007.”

Source: RevenueBase Database · checked Sep 29, 2026
10Strong evidenceAnn Arbor, MI, United StatesHQ checked Sep 29, 202611-5032 contacts →

Strong evidence

“Gene Codes Corporation is an international software firm specializing in bioinformatics software for DNA sequence analysis.”

Source: RevenueBase Database · checked Sep 29, 2026
11Indirect evidenceBozeman, MT, United StatesHQ checked Sep 29, 202611-5028 contacts →

Indirect evidence

“Golden Helix has been delivering industry-leading bioinformatics solutions for the advancement of life science research and translational medicine for over 20 years.”

Source: RevenueBase Database · checked Sep 29, 2026
12Indirect evidenceCarlsbad, CA, United StatesHQ checked Sep 29, 202651-20027 contacts →

Indirect evidence

“ChromaCode is a molecular diagnostics company with a bioinformatics focus and pedigree from Illumina, Google[x], Luminex, and Caltech.”

Source: RevenueBase Database · checked Sep 29, 2026
13Partial evidenceMadison, WI, United StatesHQ checked Sep 29, 202611-5026 contacts →

Partial evidence

“DNASTAR is a global software company that has been meeting the needs of life scientists for over 40 years by providing innovative and easy-to-use desktop software tools for…”

Source: RevenueBase Database · checked Sep 29, 2026
14Indirect evidenceNew York, NY, United StatesHQ checked Sep 29, 202611-5025 contacts →

Indirect evidence

“Basepair is a next generation bioinformatics company.”

Source: RevenueBase Database · checked Sep 29, 2026
15Indirect evidenceSan Francisco, CA, United StatesHQ checked Sep 29, 202611-5025 contacts →

Indirect evidence

“We’re building the operating system for biology.”

Source: RevenueBase Database · checked Sep 29, 2026
16Indirect evidenceSeattle, WA, United StatesHQ checked Sep 29, 202611-5019 contacts →

Indirect evidence

“Phase Genomics helps scientists solve today’s most pressing health and environmental challenges.”

Source: RevenueBase Database · checked Sep 29, 2026
17Indirect evidencePittsburgh, PA, United StatesHQ checked Sep 29, 202611-5017 contacts →

Indirect evidence

“Cybergenetics TrueAllele® technology interprets DNA data from crime scene evidence.”

Source: RevenueBase Database · checked Sep 29, 2026
18Indirect evidenceMurrieta, CA, United StatesHQ checked Sep 29, 20261-1017 contacts →

Indirect evidence

“Intelliseq is a genomics company turning complex DNA data into clear, actionable insights.”

Source: RevenueBase Database · checked Sep 29, 2026
19Partial evidenceSan Francisco, CA, United StatesHQ checked Sep 29, 202651-20017 contacts →

Partial evidence

“PREMIER Biosoft is a leading bioinformatics company offering software products and services to government agencies, pharmaceutical and biotechnology companies and academia across…”

Source: RevenueBase Database · checked Sep 29, 2026
20Indirect evidenceEl Segundo, CA, United StatesHQ checked Sep 29, 2026201-50016 contacts →

Indirect evidence

“BioDiscovery, Inc.”

Source: RevenueBase Database · checked Sep 29, 2026
21Partial evidencePalo Alto, CA, United StatesHQ checked Sep 29, 202651-20015 contacts →

Partial evidence

“We are a team of passionate scientists and engineers at Grafiti LLC, dedicated to developing cutting-edge software solutions that empower researchers to analyze, visualize, and…”

Source: RevenueBase Database · checked Sep 29, 2026
22Partial evidenceCanton, MA, United StatesHQ checked Sep 29, 202611-5015 contacts →

Partial evidence

“Universal Sequencing Technology focuses on innovative Long-Read DNA Sequencing solutions.”

Source: RevenueBase Database · checked Sep 29, 2026
23Indirect evidenceBeverly, MA, United StatesHQ checked Sep 29, 202611-5014 contacts →

Indirect evidence

“Sage Science products are built on the idea that science is more robust and reliable when it is based on high-precision, automated, reproducible technology instead of manually…”

Source: RevenueBase Database · checked Sep 29, 2026
24Indirect evidenceSeattle, WA, United StatesHQ checked Sep 29, 202611-5014 contacts →

Indirect evidence

Source: RevenueBase Database · checked Sep 29, 2026
25Indirect evidenceScotts Valley, CA, United StatesHQ checked Sep 29, 202611-5013 contacts →

Indirect evidence

“We are an early-stage biotech startup based in Santa Cruz.”

Source: RevenueBase Database · checked Sep 29, 2026

Showing 25 of 121 sequence analysis software companies based in the United States

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Sequence analysis software companies based in the United States at a glance

As of Sep 29, 2026
46.9%Verified-email coverage
20.5Average contacts per company
1-10Median size (employees)
5.8%Largest-city concentration · San Francisco
Sep 29, 2026Page data refreshed

Companies by employee count

1-10
65
11-50
39
51-200
11
201-500
4
501-1,000
1
10001+
1

Email recency for this list is measured worldwide rather than for United States, so it is reported there. Company counts and contact totals on this page are exact for United States, over 121 companies.

How this list was built

Company categories are rarely black and white. RevenueBase reads each company's own description of its business to decide whether it belongs among sequence analysis software companies, so some rows will be adjacent to the category rather than pure plays. The description and RevenueBase Smart Search rating on every row are there so you can check each match yourself.

Source
The RevenueBase company graph: 60 million companies and 398.9 million professional contacts resolved from primary sources, queried with RevenueBase Smart Search, the natural-language company search available to every RevenueBase user.
What qualifies
Companies headquartered in the United States whose own description of what they do matches “sequence analysis software companies”. Matching reads each company's description, not its industry code or its name.
RevenueBase Smart Search
RevenueBase Smart Search is how this list is assembled and how each row is rated. RevenueBase's data engine and AI assess a company's LinkedIn profile, information supplied directly by the company, its website and other publicly available information, then relate it to a category defined in a user's own words. Each row is rated strong evidence (its own description names sequence analysis software companies), partial evidence (it names part of the category) or indirect evidence (the description shown names none of it and the match rests on the rest of the company's profile). The description supporting each rating is quoted on the row.
What we exclude
Companies whose own description does not clearly place them among sequence analysis software companies, and records with no verified work email. Companies headquartered outside United States are excluded even when they keep an office there.
Match quality
In blind human judging of this matching method, 86% of matched companies were on target. Expect roughly 1 in 7 rows to be adjacent to the category rather than a pure play. Every row shows the company's own description and its RevenueBase Smart Search rating so you can judge each match yourself. Read the full methodology: how the lists are built, how the judging worked, and what the figure means.
Ranking
Team size, largest first: companies are ordered by the number of professionals RevenueBase tracks at each one. Employee ranges shown are reported bands, for context.
Verification
Every listed company carries at least one verified work email, 1,164 across the full list. Contacts re-verify on a rolling cadence, and each contact's own verification date is shown inside RevenueBase.
Refresh
This page's figures were pulled from the company graph on September 29, 2026. Lists refresh periodically as the graph is re-checked.
Corrections
Wrong category, wrong headquarters, or a company that has closed? Use “Report an issue” on any row. Reports go to the RevenueBase Data Team and feed back into the company graph.

Frequently asked

What is RevenueBase Smart Search?

RevenueBase Smart Search is how RevenueBase decides which companies belong on this list and how strongly each one fits. Its data engine and AI assess a company's LinkedIn profile, information supplied directly by the company, its website and other publicly available information, then relate it to the category the list is about. Each row is rated strong evidence when the company's own description names sequence analysis software companies, partial evidence when it names part of the category, and indirect evidence when the description shown names none of it and the match rests on the rest of the company's profile.

How many sequence analysis software companies are there based in the United States?

RevenueBase identified 121 sequence analysis software companies headquartered in the United States as of September 2026, matched on each company's own description of what it does rather than its industry code.

What is the largest company on this list?

Pacbio, headquartered in Menlo Park, tops this list with the largest team on record.

Which city has the most sequence analysis software companies?

San Francisco leads with 7 headquartered companies, followed by San Diego (6) and Seattle (5).

How do I get contact information for these companies?

A free RevenueBase account lets you run this exact search and work the top results, verified emails and direct dials included. Upgrading unlocks all 1,164 verified decision-maker contacts tracked across these 121 companies.

How current is this list?

The list refreshes periodically as the company graph is re-checked. This page's figures were pulled on September 29, 2026.

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About this data

RevenueBase is a B2B data infrastructure company. Its company graph covers 60 million companies and 398.9 million professional contacts, with emails verified on a rolling cadence rather than scraped once and left to decay. These company lists are generated directly from that graph with RevenueBase Smart Search, the same natural-language company search every RevenueBase user has: describe a market in plain words, get the companies that match, and add verified emails and direct dials for the people at them. It is the same data that powers RevenueBase's B2B data products, and a free account includes 500 credits to start. How these lists are built and judged.