Company lists · Data refreshed September 2026

Top 25 Proteomics software companies based in the United States

RevenueBase identified 325 proteomics software companies headquartered in the United States as of September 2026 and tracks 6,634 professional contacts across them, including 2,509 with verified work emails and 2,560 with mobile numbers. San Diego is the largest hub.

This list covers proteomics software companies headquartered in the United States, matched on what each company actually does as described in its own words. Ranked by team size, largest first. Every row shows the company's own description, how directly it supports the match, and when it was last checked. Data refreshed September 5, 2026.

Published by RevenueBase, a B2B data infrastructure company. This list was built with RevenueBase SmartSearch, the natural-language company search RevenueBase customers use to build their own targeted lists and unlock verified emails and direct dials at the companies on them. How these lists are built and judged.

How to read this list HQ checked on every row Match evidence on every row Refreshed Sep 5, 2026 86% judged on-target in blind review
325Companies
6,634Contacts tracked
2,509Verified emails
2,560Mobile numbers
Unlock all 325 companies Free signup · no credit card · 500 free credits

The 25 largest proteomics software companies based in the United States

Ranked by team size
Top 25 of 325 proteomics software companies based in the United States, ranked by team size, largest first. Data refreshed Sep 5, 2026. Evidence rates how directly each company's own description names proteomics software companies: strong (names it), partial (names part of it), indirect (matched on its full profile rather than the summary shown). Click a count to unlock that company's people.
#CompanyHeadquartersEmployeesContacts
1
Standard BiotoolsPartial evidence
South San Francisco, CA, United StatesHQ checked Sep 5, 2026501-1,000550

“Standard BioTools delivers the leading proteomic and multi-omic solutions that enable researchers to discover unique biological insights not accessible by other technologies.”

Source: company website · checked Sep 5, 2026
2
Unchained LabsIndirect evidence
Pleasanton, CA, United StatesHQ checked Sep 5, 2026201-500219

“Here's the deal.”

Source: company website · checked Sep 5, 2026
3
Quantum-SiPartial evidence
Branford, CT, United StatesHQ checked Sep 5, 202651-200204

“Quantum-Si is transforming proteomics with a benchtop platform that brings single-molecule protein analysis to every lab, everywhere.”

Source: company website · checked Sep 5, 2026
4
Alamar Biosciences, INCPartial evidence
Fremont, CA, United StatesHQ checked Sep 5, 2026201-500181

“Alamar Biosciences is powering precision proteomics with automated, high throughput solutions for ultra-high sensitivity protein analysis across a range of multiplex levels.”

Source: company website · checked Sep 5, 2026
5
Nautilus BiotechnologyIndirect evidence
San Carlos, WA, United StatesHQ checked Sep 5, 202651-200155

“Born from the founders’ recognition that their diverse but complementary skills and experiences would enable them to successfully address challenges that others had not, Nautilus…”

Source: company website · checked Sep 5, 2026
6
SEERIndirect evidence
Redwood City, CA, United StatesHQ checked Sep 5, 202651-200152

“At Seer, we develop innovative solutions that act as a gateway to the proteome.”

Source: company website · checked Sep 5, 2026
7Newark, CA, United StatesHQ checked Sep 5, 202651-200124

“Bio-Techne Spatial, a leader in applied spatial biology solutions, empowers scientists and clinicians around the world to push the boundaries of science and medicine.”

Source: company website · checked Sep 5, 2026
8
ATUMIndirect evidence
Newark, CA, United StatesHQ checked Sep 5, 202651-200122

“ATUM is an industry-leading provider of life science tools and solutions.”

Source: company website · checked Sep 5, 2026
9
SomascanIndirect evidence
San Diego, CA, United StatesHQ checked Sep 5, 2026201-500109

“SomaLogic is now an Illumina company.”

Source: company website · checked Sep 5, 2026
10
AnaspecIndirect evidence
Fremont, CA, United StatesHQ checked Sep 5, 202651-20096

“AnaSpec, a subsidiary of Kaneka Eurogentec, is a globally recognized biotechnology company that manufactures and sells custom and catalog Peptides, Fluorogenic and FRET Assay…”

Source: company website · checked Sep 5, 2026
11
Frontier MedicinesIndirect evidence
South San Francisco, MA, United StatesHQ checked Sep 5, 202651-20091

“Frontier Medicines, located in South San Francisco, CA and Boston, MA, is a precision medicine company that has pioneered a powerful discovery and development platform designed to…”

Source: company website · checked Sep 5, 2026
12
CSBIOIndirect evidence
Menlo Park, CA, United StatesHQ checked Sep 5, 202651-20076

“CSBio is a leading peptide and peptide synthesizer manufacturing company located in Silicon Valley, California.”

Source: company website · checked Sep 5, 2026
13
Cygnus Technologies, LLCIndirect evidence
Leland, NC, United StatesHQ checked Sep 5, 202651-20072

“Cygnus Technologies, part of Maravai LifeSciences, provides best-in-class analytical tools and solutions to help companies developing therapeutic proteins, vaccines, antibodies…”

Source: company website · checked Sep 5, 2026
14
SapientPartial evidence
San Diego, CA, United StatesHQ checked Sep 5, 202651-20067

“Sapient is a leader in multi-omics data generation and insight delivery, providing bespoke services for proteomics, metabolomics, and lipidomics that enable biopharma sponsors to…”

Source: company website · checked Sep 5, 2026
15
RaybiotechPartial evidence
Norcross, GA, United StatesHQ checked Sep 5, 202651-20063

“RayBiotech is a leading life sciences company providing proteomic discovery tools to scientists in 85 countries worldwide.”

Source: company website · checked Sep 5, 2026
16
Protein Metrics, LLCPartial evidence
Boston, MA, United StatesHQ checked Sep 5, 202651-20059

“Protein Metrics' vendor-neutral software allows scientists to use data generated on analytical instruments like mass spectrometers to quickly identify and report protein sequences…”

Source: company website · checked Sep 5, 2026
17
Intervenn BiosciencesPartial evidence
South San Francisco, CA, United StatesHQ checked Sep 5, 202651-20059

“We are leveraging artificial intelligence to map the glycoprotein control points that orchestrate disease progression-the missing link that genomics and proteomics can't see.”

Source: company website · checked Sep 5, 2026
18
Prognomiq INCPartial evidence
San Mateo, CA, United StatesHQ checked Sep 5, 202611-5055

“PrognomiQ aims to generate proteomic information with high accuracy, scale and speed.”

Source: company website · checked Sep 5, 2026
19
A-Alpha BIOIndirect evidence
Seattle, WA, United StatesHQ checked Sep 5, 202611-5054

“A-Alpha Bio is a biotechnology platform company that measures, predicts, and engineers protein-protein interactions at scale.”

Source: company website · checked Sep 5, 2026
20
Mobilion Systems, INCIndirect evidence
Chadds Ford, PA, United StatesHQ checked Sep 5, 202651-20054

“MOBILion’s technology makes it easy to separate, identify and analyze the most challenging molecules that other instruments fail to detect.”

Source: company website · checked Sep 5, 2026
21
ProlytixIndirect evidence
Essex Junction, VT, United StatesHQ checked Sep 5, 202651-20050

“Prolytix, formerly Haematologic Technologies, has 30+ years of experience in protein chemistry, which ensures our team will identify and solve the challenges of your large…”

Source: company website · checked Sep 5, 2026
22
Genome InternationalPartial evidence
Madison, WI, United StatesHQ checked Sep 5, 202651-20050

“Genome International is a Bio-IT company that provides innovative software products and services in clinical genomics and Information Technology.”

Source: company website · checked Sep 5, 2026
23
Omicslogic INCIndirect evidence
Houston, TX, United StatesHQ checked Sep 5, 202611-5048

“Deciphering Omics Data with Precision and Pioneering Data Science to Unveil the Language of Life.”

Source: company website · checked Sep 5, 2026
24
Essential Software INCIndirect evidence
Gaithersburg, MD, United StatesHQ checked Sep 5, 202651-20046
Source: company website · checked Sep 5, 2026
25
EbiosciencePartial evidence
San Diego, CA, United StatesHQ checked Sep 5, 20261,001-5,00046

“Affymetrix including eBioscience, an Affymetrix company, works to integrate genomics, proteomics, and pathways biology for the development of personalized medicine.”

Source: company website · checked Sep 5, 2026

Showing 25 of 325 proteomics software companies based in the United States

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Proteomics software companies based in the United States at a glance

As of Sep 5, 2026
1-10Median size (employees)
San DiegoLargest hub · 16 HQs
2,560Contacts with mobile numbers
Sep 5, 2026Data refreshed

Companies by employee count

1-10
166
11-50
106
51-200
33
201-500
9
501-1,000
5
1,001-5,000
5
10001+
1

Verified emails by last verification

0–30
2,310
31–60
168
61–90
3
90–180
1
180+
27

How this list was built

Company categories are rarely black and white. RevenueBase reads each company's own description of its business to decide whether it belongs among proteomics software companies, so some rows will be adjacent to the category rather than pure plays. The description and evidence rating on every row are there so you can check each match yourself.

Source
The RevenueBase company graph: 60 million companies and 398.9 million professional contacts resolved from primary sources, queried with RevenueBase SmartSearch, the natural-language company search available to every RevenueBase user.
What qualifies
Companies headquartered in the United States whose own description of what they do matches “proteomics software companies”. Matching reads each company's description, not its industry code or its name.
What we exclude
Companies whose own description does not clearly place them among proteomics software companies, and records with no verified work email. Companies headquartered outside United States are excluded even when they keep an office there.
Match quality
In blind human judging of this matching method, 86% of matched companies were on target. Expect roughly 1 in 7 rows to be adjacent to the category rather than a pure play. Every row shows the company's own description and an evidence rating so you can judge each match yourself. Read the full methodology: how the lists are built, how the judging worked, and what the figure means.
Ranking
Team size, largest first: companies are ordered by the number of professionals RevenueBase tracks at each one. Employee ranges shown are reported bands, for context.
Verification
Every listed company carries at least one verified work email, 2,509 across the full list. Contacts re-verify on a rolling cadence, and each contact's own verification date is shown inside RevenueBase.
Refresh
This page's figures were pulled from the company graph on September 5, 2026. Lists refresh periodically as the graph is re-checked.
Corrections
Wrong category, wrong headquarters, or a company that has closed? Use “Report an issue” on any row. Reports go to the RevenueBase Data Team and feed back into the company graph.

Frequently asked

How many proteomics software companies are there based in the United States?

RevenueBase identified 325 proteomics software companies headquartered in the United States as of September 2026, matched on each company's own description of what it does rather than its industry code.

What is the largest company on this list?

Standard Biotools, headquartered in South San Francisco, tops this list with the largest team on record.

Which city has the most proteomics software companies?

San Diego leads with 16 headquartered companies, followed by Houston (9) and San Francisco (9).

How do I get contact information for these companies?

A free RevenueBase account lets you run this exact search and work the top results, verified emails and direct dials included. Upgrading unlocks all 2,509 verified decision-maker contacts tracked across these 325 companies.

How current is this list?

The list refreshes periodically as the company graph is re-checked. This page's figures were pulled on September 5, 2026.

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About this data

RevenueBase is a B2B data infrastructure company. Its company graph covers 60 million companies and 398.9 million professional contacts, with emails verified on a rolling cadence rather than scraped once and left to decay. These company lists are generated directly from that graph with RevenueBase SmartSearch, the same natural-language company search every RevenueBase user has: describe a market in plain words, get the companies that match, and add verified emails and direct dials for the people at them. It is the same data that powers RevenueBase's B2B data products, and a free account includes 500 credits to start. How these lists are built and judged.