Company lists · Data refreshed September 2026

Top 23 Protein structure prediction software companies based in the United States

RevenueBase identified 55 protein structure prediction software companies headquartered in the United States as of September 2026 and tracks 3,138 professional contacts across them, including 2,121 with verified work emails. New York is the largest hub.

This list covers protein structure prediction software companies headquartered in the United States, matched on what each company actually does as described in its own words. Ranked by team size, largest first. Every row shows the company's own description, its RevenueBase Smart Search rating, and when it was last checked. Data refreshed September 29, 2026.

Published by RevenueBase, a B2B data infrastructure company. This list was built with RevenueBase Smart Search, the natural-language company search RevenueBase customers use to build their own targeted lists and unlock verified emails and direct dials at the companies on them. How these lists are built and judged.

How to read this list HQ checked on every row RevenueBase Smart Search rating on every row Refreshed Sep 29, 2026 86% judged on-target in blind review
55Companies
3,138Contacts tracked
2,121Verified emails
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The 23 largest protein structure prediction software companies based in the United States

Ranked by team size
Top 23 of 55 protein structure prediction software companies based in the United States, ranked by team size, largest first. Data refreshed Sep 29, 2026. RevenueBase Smart Search rates how each company's information relates to protein structure prediction software companies: strong evidence (its own description names it), partial (names part of it), indirect (matched on the rest of its profile rather than the description shown). Click a contact count to view that company's people.
#CompanyRevenueBase Smart SearchHeadquartersEmployeesContacts
1Partial evidenceRadnor, PA, United StatesHQ checked Sep 29, 20261,001-5,0001,237 contacts →

Partial evidence

“Certara accelerates medicines using proprietary biosimulation software, technology and services to transform traditional drug discovery and development.”

Source: RevenueBase Database · checked Sep 29, 2026
2Indirect evidenceNew York, NY, United StatesHQ checked Sep 29, 2026501-1,000957 contacts →

Indirect evidence

“Schrödinger’s industry-leading computational platform facilitates the research efforts of biopharmaceutical and industrial companies, academic institutions, and government…”

Source: RevenueBase Database · checked Sep 29, 2026
3Indirect evidenceNew York, NY, United StatesHQ checked Sep 29, 202651-200149 contacts →

Indirect evidence

“D.”

Source: RevenueBase Database · checked Sep 29, 2026
4Partial evidenceSanta Fe, NM, United StatesHQ checked Sep 29, 202651-200121 contacts →

Partial evidence

“OpenEye, Cadence Molecular Sciences is an industry leader in computational molecular design based on decades of delivering rapid, robust, and scalable software, toolkits, and…”

Source: RevenueBase Database · checked Sep 29, 2026
5Partial evidenceNew York, NY, United StatesHQ checked Sep 29, 202651-20070 contacts →

Partial evidence

“NYSBC is a global leader in structural biology with unsurpassed instrumentation and expertise, providing biomedical research services to commercial and academic clients, including…”

Source: RevenueBase Database · checked Sep 29, 2026
6Indirect evidenceBrooklyn, United StatesHQ checked Sep 29, 202611-5035 contacts →

Indirect evidence

“Overview: AccutarBio employs artificial intelligence to revolutionize drug discovery.”

Source: RevenueBase Database · checked Sep 29, 2026
7Indirect evidenceSan Francisco, CA, United StatesHQ checked Sep 29, 202611-5031 contacts →

Indirect evidence

“Atomwise is a preclinical pharma company revolutionizing how drugs are discovered with AI.”

Source: RevenueBase Database · checked Sep 29, 2026
8Indirect evidenceSan Diego, CA, United StatesHQ checked Sep 29, 202611-5028 contacts →

Indirect evidence

“Nanome is the ultimate interface for scientific discovery, starting with molecular data.”

Source: RevenueBase Database · checked Sep 29, 2026
9Partial evidenceMadison, WI, United StatesHQ checked Sep 29, 202611-5026 contacts →

Partial evidence

“DNASTAR is a global software company that has been meeting the needs of life scientists for over 40 years by providing innovative and easy-to-use desktop software tools for…”

Source: RevenueBase Database · checked Sep 29, 2026
10Partial evidenceCambridge, MA, United StatesHQ checked Sep 29, 202611-5025 contacts →

Partial evidence

“MetaCell is a life science-focused software company composed of scientists and software engineers with deep domain expertise in computational neuroscience, molecular biology, data…”

Source: RevenueBase Database · checked Sep 29, 2026
11Partial evidenceHillsborough, NJ, United StatesHQ checked Sep 29, 202611-5020 contacts →

Partial evidence

“DeltaSoft has been providing scientific software and expert services for research companies since 1996.”

Source: RevenueBase Database · checked Sep 29, 2026
12Indirect evidenceLos Angeles, CA, United StatesHQ checked Sep 29, 20261-1015 contacts →

Indirect evidence

“Pythialabs is an innovative technology start-up based in Los Angeles that aims to develop cutting-edge solutions for the biotechnology industry.”

Source: RevenueBase Database · checked Sep 29, 2026
13Partial evidenceHalf Moon Bay, CA, United StatesHQ checked Sep 29, 202611-5015 contacts →

Partial evidence

“GenNext® Technologies offers advanced instrumentation and contract services for rapid insights into the higher order structure, interactions, folding, aggregation, formulation…”

Source: RevenueBase Database · checked Sep 29, 2026
14Indirect evidenceSan Francisco, CA, United StatesHQ checked Sep 29, 202611-5011 contacts →

Indirect evidence

“At we provide web interfaces and APIs for the leading publicly available molecular design tools.”

Source: RevenueBase Database · checked Sep 29, 2026
15Indirect evidenceDoylestown, PA, United StatesHQ checked Sep 29, 20261-1011 contacts →

Indirect evidence

“The mission of Conifer Point is to be the premier provider of web-based, drug design tools so that researchers can access rigorous molecular modeling in user friendly format.”

Source: RevenueBase Database · checked Sep 29, 2026
16Strong evidenceBerkeley, CA, United StatesHQ checked Sep 29, 202611-509 contacts →

Strong evidence

“We’ve created the gold standard software to predictively model molecular interactions.”

Source: RevenueBase Database · checked Sep 29, 2026
17Partial evidenceSan Francisco, United StatesHQ checked Sep 29, 20261-106 contacts →

Partial evidence

“Building the world’s largest atlas of engineered protein interaction data.”

Source: RevenueBase Database · checked Sep 29, 2026
18Indirect evidenceCambridge, MA, United StatesHQ checked Sep 29, 20261-106 contacts →

Indirect evidence

“Building genomic intelligence”

Source: RevenueBase Database · checked Sep 29, 2026
19Indirect evidenceGermantown, MD, United StatesHQ checked Sep 29, 20261-104 contacts →

Indirect evidence

“VERACHEM LLC is a biotechnology company based out of P.O.”

Source: RevenueBase Database · checked Sep 29, 2026
20Partial evidenceBaltimore, MD, United StatesHQ checked Sep 29, 20261-104 contacts →

Partial evidence

“SilcsBio provides software and services for unlocking the full potential of computer driven drug design.”

Source: RevenueBase Database · checked Sep 29, 2026
21Strong evidenceSan Francisco, CA, United StatesHQ checked Sep 29, 20261-103 contacts →

Strong evidence

“Accelero Biostructures accelerates structure-based drug discovery and protein engineering using its Synchrotron-integrated platform for High-Throughput Protein X-ray…”

Source: RevenueBase Database · checked Sep 29, 2026
22Indirect evidenceAlbuquerque, NM, United StatesHQ checked Sep 29, 20261-102 contacts →

Indirect evidence

“Advance your group's research mission and catalyze breakthroughs by utilizing RDG's scientists' expertise in macromolecular modeling on demand.”

Source: RevenueBase Database · checked Sep 29, 2026
23Strong evidenceWoodridge, IL, United StatesHQ checked Sep 29, 202611-501 contacts →

Strong evidence

“Shamrock Structures offers protein crystallography, medicinal chemistry and cell biology research services to enable clients to reduce the time from protein target to lead…”

Source: RevenueBase Database · checked Sep 29, 2026

Showing 23 of 55 protein structure prediction software companies based in the United States

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Protein structure prediction software companies based in the United States at a glance

As of Sep 29, 2026
67.6%Verified-email coverage
57.1Average contacts per company
1-10Median size (employees)
9.1%Largest-city concentration · New York
Sep 29, 2026Page data refreshed

Companies by employee count

1-10
31
11-50
17
51-200
3
201-500
2
501-1,000
1
1,001-5,000
1

Email recency for this list is measured worldwide rather than for United States, so it is reported there. Company counts and contact totals on this page are exact for United States, over 55 companies.

How this list was built

Company categories are rarely black and white. RevenueBase reads each company's own description of its business to decide whether it belongs among protein structure prediction software companies, so some rows will be adjacent to the category rather than pure plays. The description and RevenueBase Smart Search rating on every row are there so you can check each match yourself.

Source
The RevenueBase company graph: 60 million companies and 398.9 million professional contacts resolved from primary sources, queried with RevenueBase Smart Search, the natural-language company search available to every RevenueBase user.
What qualifies
Companies headquartered in the United States whose own description of what they do matches “protein structure prediction software companies”. Matching reads each company's description, not its industry code or its name.
RevenueBase Smart Search
RevenueBase Smart Search is how this list is assembled and how each row is rated. RevenueBase's data engine and AI assess a company's LinkedIn profile, information supplied directly by the company, its website and other publicly available information, then relate it to a category defined in a user's own words. Each row is rated strong evidence (its own description names protein structure prediction software companies), partial evidence (it names part of the category) or indirect evidence (the description shown names none of it and the match rests on the rest of the company's profile). The description supporting each rating is quoted on the row.
What we exclude
Companies whose own description does not clearly place them among protein structure prediction software companies, and records with no verified work email. Companies headquartered outside United States are excluded even when they keep an office there.
Match quality
In blind human judging of this matching method, 86% of matched companies were on target. Expect roughly 1 in 7 rows to be adjacent to the category rather than a pure play. Every row shows the company's own description and its RevenueBase Smart Search rating so you can judge each match yourself. Read the full methodology: how the lists are built, how the judging worked, and what the figure means.
Ranking
Team size, largest first: companies are ordered by the number of professionals RevenueBase tracks at each one. Employee ranges shown are reported bands, for context.
Verification
Every listed company carries at least one verified work email, 2,121 across the full list. Contacts re-verify on a rolling cadence, and each contact's own verification date is shown inside RevenueBase.
Refresh
This page's figures were pulled from the company graph on September 29, 2026. Lists refresh periodically as the graph is re-checked.
Corrections
Wrong category, wrong headquarters, or a company that has closed? Use “Report an issue” on any row. Reports go to the RevenueBase Data Team and feed back into the company graph.

Frequently asked

What is RevenueBase Smart Search?

RevenueBase Smart Search is how RevenueBase decides which companies belong on this list and how strongly each one fits. Its data engine and AI assess a company's LinkedIn profile, information supplied directly by the company, its website and other publicly available information, then relate it to the category the list is about. Each row is rated strong evidence when the company's own description names protein structure prediction software companies, partial evidence when it names part of the category, and indirect evidence when the description shown names none of it and the match rests on the rest of the company's profile.

How many protein structure prediction software companies are there based in the United States?

RevenueBase identified 55 protein structure prediction software companies headquartered in the United States as of September 2026, matched on each company's own description of what it does rather than its industry code.

What is the largest company on this list?

Certara, headquartered in Radnor, tops this list with the largest team on record.

Which city has the most protein structure prediction software companies?

New York leads with 5 headquartered companies, followed by San Diego (4) and San Francisco (4).

How do I get contact information for these companies?

A free RevenueBase account lets you run this exact search and work the top results, verified emails and direct dials included. Upgrading unlocks all 2,121 verified decision-maker contacts tracked across these 55 companies.

How current is this list?

The list refreshes periodically as the company graph is re-checked. This page's figures were pulled on September 29, 2026.

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About this data

RevenueBase is a B2B data infrastructure company. Its company graph covers 60 million companies and 398.9 million professional contacts, with emails verified on a rolling cadence rather than scraped once and left to decay. These company lists are generated directly from that graph with RevenueBase Smart Search, the same natural-language company search every RevenueBase user has: describe a market in plain words, get the companies that match, and add verified emails and direct dials for the people at them. It is the same data that powers RevenueBase's B2B data products, and a free account includes 500 credits to start. How these lists are built and judged.