Company lists · Data refreshed September 2026

Top 18 Genome assembly software companies based in the United States

RevenueBase identified 47 genome assembly software companies headquartered in the United States as of September 2026 and tracks 1,275 professional contacts across them, including 716 with verified work emails. San Francisco is the largest hub.

This list covers genome assembly software companies headquartered in the United States, matched on what each company actually does as described in its own words. Ranked by team size, largest first. Every row shows the company's own description, its RevenueBase Smart Search rating, and when it was last checked. Data refreshed September 28, 2026.

Published by RevenueBase, a B2B data infrastructure company. This list was built with RevenueBase Smart Search, the natural-language company search RevenueBase customers use to build their own targeted lists and unlock verified emails and direct dials at the companies on them. How these lists are built and judged.

How to read this list HQ checked on every row RevenueBase Smart Search rating on every row Refreshed Sep 28, 2026 86% judged on-target in blind review
47Companies
1,275Contacts tracked
716Verified emails
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The 18 largest genome assembly software companies based in the United States

Ranked by team size
Top 18 of 47 genome assembly software companies based in the United States, ranked by team size, largest first. Data refreshed Sep 28, 2026. RevenueBase Smart Search rates how each company's information relates to genome assembly software companies: strong evidence (its own description names it), partial (names part of it), indirect (matched on the rest of its profile rather than the description shown). Click a contact count to view that company's people.
#CompanyRevenueBase Smart SearchHeadquartersEmployeesContacts
1Indirect evidenceMenlo Park, CA, United StatesHQ checked Sep 28, 2026501-1,000636 contacts →

Indirect evidence

“At PacBio, we’re devoted to empowering you.”

Source: RevenueBase Database · checked Sep 28, 2026
2Partial evidenceBoulder, CO, United StatesHQ checked Sep 28, 202651-200228 contacts →

Partial evidence

“Watchmaker Genomics is a biotechnology company that specializes in advanced enzymology to develop precision tools for life sciences.”

Source: RevenueBase Database · checked Sep 28, 2026
3Partial evidenceAnn Arbor, MI, United StatesHQ checked Sep 28, 202611-5032 contacts →

Partial evidence

“Gene Codes Corporation is an international software firm specializing in bioinformatics software for DNA sequence analysis.”

Source: RevenueBase Database · checked Sep 28, 2026
4Partial evidenceMadison, WI, United StatesHQ checked Sep 28, 202611-5026 contacts →

Partial evidence

“DNASTAR is a global software company that has been meeting the needs of life scientists for over 40 years by providing innovative and easy-to-use desktop software tools for…”

Source: RevenueBase Database · checked Sep 28, 2026
5Indirect evidenceSan Francisco, CA, United StatesHQ checked Sep 28, 202611-5025 contacts →

Indirect evidence

“We’re building the operating system for biology.”

Source: RevenueBase Database · checked Sep 28, 2026
6Partial evidenceSeattle, WA, United StatesHQ checked Sep 28, 202611-5019 contacts →

Partial evidence

“Phase Genomics helps scientists solve today’s most pressing health and environmental challenges.”

Source: RevenueBase Database · checked Sep 28, 2026
7Partial evidenceMurrieta, CA, United StatesHQ checked Sep 28, 20261-1017 contacts →

Partial evidence

“Intelliseq is a genomics company turning complex DNA data into clear, actionable insights.”

Source: RevenueBase Database · checked Sep 28, 2026
8Partial evidenceSan Francisco, CA, United StatesHQ checked Sep 28, 202651-20017 contacts →

Partial evidence

“PREMIER Biosoft is a leading bioinformatics company offering software products and services to government agencies, pharmaceutical and biotechnology companies and academia across…”

Source: RevenueBase Database · checked Sep 28, 2026
9Partial evidencePortsmouth, NH, United StatesHQ checked Sep 28, 20261-1015 contacts →

Partial evidence

“SeqCoast Genomics is an expert-guided genomics center with deep expertise in genome sequencing and bioinformatics services.”

Source: RevenueBase Database · checked Sep 28, 2026
10Indirect evidenceScotts Valley, CA, United StatesHQ checked Sep 28, 202611-5013 contacts →

Indirect evidence

“We are an early-stage biotech startup based in Santa Cruz.”

Source: RevenueBase Database · checked Sep 28, 2026
11Strong evidenceLong Island City, NY, United StatesHQ checked Sep 28, 202611-5013 contacts →

Strong evidence

“Gencove creates high-volume, cost-sensitive sequencing software-as-a-service to help academic, agriculture, biotech, diagnostic, and pharmaceutical companies get all the genomic…”

Source: RevenueBase Database · checked Sep 28, 2026
12Partial evidenceMountain View, CA, United StatesHQ checked Sep 28, 20261-107 contacts →

Partial evidence

“Sentieon's software dramatically improves the performance of bioinformatics tools.”

Source: RevenueBase Database · checked Sep 28, 2026
13Indirect evidenceCarlsbad, CA, United StatesHQ checked Sep 28, 20261-107 contacts →

Indirect evidence

“SeqOnce Biosciences, Inc.”

Source: RevenueBase Database · checked Sep 28, 2026
14Indirect evidenceState College, PA, United StatesHQ checked Sep 28, 202611-505 contacts →

Indirect evidence

“SoftGenetics, LLC is a biotechnology company based out of 100 Oakwood Avenue Suite 350, State College, Pennsylvania, United States.”

Source: RevenueBase Database · checked Sep 28, 2026
15Strong evidenceSan Francisco, CA, United StatesHQ checked Sep 28, 20261-102 contacts →

Strong evidence

“We build genomics software that is a joy to use.”

Source: RevenueBase Database · checked Sep 28, 2026
16Partial evidenceEmeryville, CA, United StatesHQ checked Sep 28, 20261-102 contacts →

Partial evidence

“Toyoko bridges the gap between life science professionals and software developers.”

Source: RevenueBase Database · checked Sep 28, 2026
17Partial evidenceWalnut Creek, CA, United StatesHQ checked Sep 28, 20261-102 contacts →

Partial evidence

“SciDM (Scientific Data Management) aims to bridge a gap between frontiers in Software Technology and Scientific research.”

Source: RevenueBase Database · checked Sep 28, 2026
18Indirect evidenceNew York, NY, United StatesHQ checked Sep 28, 20261-101 contacts →

Indirect evidence

“Welcome to Tinybio!”

Source: RevenueBase Database · checked Sep 28, 2026

Showing 18 of 47 genome assembly software companies based in the United States

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Genome assembly software companies based in the United States at a glance

As of Sep 28, 2026
56.2%Verified-email coverage
27.1Average contacts per company
1-10Median size (employees)
12.8%Largest-city concentration · San Francisco
Sep 28, 2026Page data refreshed

Companies by employee count

1-10
27
11-50
16
51-200
2
501-1,000
1
10001+
1

Email recency for this list is measured worldwide rather than for United States, so it is reported there. Company counts and contact totals on this page are exact for United States, over 47 companies.

How this list was built

Company categories are rarely black and white. RevenueBase reads each company's own description of its business to decide whether it belongs among genome assembly software companies, so some rows will be adjacent to the category rather than pure plays. The description and RevenueBase Smart Search rating on every row are there so you can check each match yourself.

Source
The RevenueBase company graph: 60 million companies and 398.9 million professional contacts resolved from primary sources, queried with RevenueBase Smart Search, the natural-language company search available to every RevenueBase user.
What qualifies
Companies headquartered in the United States whose own description of what they do matches “genome assembly software companies”. Matching reads each company's description, not its industry code or its name.
RevenueBase Smart Search
RevenueBase Smart Search is how this list is assembled and how each row is rated. RevenueBase's data engine and AI assess a company's LinkedIn profile, information supplied directly by the company, its website and other publicly available information, then relate it to a category defined in a user's own words. Each row is rated strong evidence (its own description names genome assembly software companies), partial evidence (it names part of the category) or indirect evidence (the description shown names none of it and the match rests on the rest of the company's profile). The description supporting each rating is quoted on the row.
What we exclude
Companies whose own description does not clearly place them among genome assembly software companies, and records with no verified work email. Companies headquartered outside United States are excluded even when they keep an office there.
Match quality
In blind human judging of this matching method, 86% of matched companies were on target. Expect roughly 1 in 7 rows to be adjacent to the category rather than a pure play. Every row shows the company's own description and its RevenueBase Smart Search rating so you can judge each match yourself. Read the full methodology: how the lists are built, how the judging worked, and what the figure means.
Ranking
Team size, largest first: companies are ordered by the number of professionals RevenueBase tracks at each one. Employee ranges shown are reported bands, for context.
Verification
Every listed company carries at least one verified work email, 716 across the full list. Contacts re-verify on a rolling cadence, and each contact's own verification date is shown inside RevenueBase.
Refresh
This page's figures were pulled from the company graph on September 28, 2026. Lists refresh periodically as the graph is re-checked.
Corrections
Wrong category, wrong headquarters, or a company that has closed? Use “Report an issue” on any row. Reports go to the RevenueBase Data Team and feed back into the company graph.

Frequently asked

What is RevenueBase Smart Search?

RevenueBase Smart Search is how RevenueBase decides which companies belong on this list and how strongly each one fits. Its data engine and AI assess a company's LinkedIn profile, information supplied directly by the company, its website and other publicly available information, then relate it to the category the list is about. Each row is rated strong evidence when the company's own description names genome assembly software companies, partial evidence when it names part of the category, and indirect evidence when the description shown names none of it and the match rests on the rest of the company's profile.

How many genome assembly software companies are there based in the United States?

RevenueBase identified 47 genome assembly software companies headquartered in the United States as of September 2026, matched on each company's own description of what it does rather than its industry code.

What is the largest company on this list?

Pacbio, headquartered in Menlo Park, tops this list with the largest team on record.

Which city has the most genome assembly software companies?

San Francisco leads with 6 headquartered companies, followed by Cambridge (2) and New York (2).

How do I get contact information for these companies?

A free RevenueBase account lets you run this exact search and work the top results, verified emails and direct dials included. Upgrading unlocks all 716 verified decision-maker contacts tracked across these 47 companies.

How current is this list?

The list refreshes periodically as the company graph is re-checked. This page's figures were pulled on September 28, 2026.

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About this data

RevenueBase is a B2B data infrastructure company. Its company graph covers 60 million companies and 398.9 million professional contacts, with emails verified on a rolling cadence rather than scraped once and left to decay. These company lists are generated directly from that graph with RevenueBase Smart Search, the same natural-language company search every RevenueBase user has: describe a market in plain words, get the companies that match, and add verified emails and direct dials for the people at them. It is the same data that powers RevenueBase's B2B data products, and a free account includes 500 credits to start. How these lists are built and judged.