Company lists · Data refreshed September 2026

Top 25 AI bioinformatics companies based in San Diego, United States

RevenueBase identified 59 AI bioinformatics companies headquartered in San Diego, United States as of September 2026 and tracks 10,504 professional contacts across them, including 4,913 with verified work emails. San Diego is the largest hub.

This list covers AI bioinformatics companies headquartered in San Diego, United States, matched on what each company actually does as described in its own words. Ranked by team size, largest first. Every row shows the company's own description, its RevenueBase Smart Search rating, and when it was last checked. Data refreshed September 7, 2026.

Published by RevenueBase, a B2B data infrastructure company. This list was built with RevenueBase Smart Search, the natural-language company search RevenueBase customers use to build their own targeted lists and unlock verified emails and direct dials at the companies on them. How these lists are built and judged.

How to read this list HQ checked on every row RevenueBase Smart Search rating on every row Refreshed Sep 7, 2026 86% judged on-target in blind review
59Companies
10,504Contacts tracked
4,913Verified emails
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The 25 largest AI bioinformatics companies based in San Diego, United States

Ranked by team size
Top 25 of 59 AI bioinformatics companies based in San Diego, United States, ranked by team size, largest first. Data refreshed Sep 7, 2026. RevenueBase Smart Search rates how each company's information relates to AI bioinformatics companies: strong evidence (its own description names it), partial (names part of it), indirect (matched on the rest of its profile rather than the description shown). Click a contact count to view that company's people.
#CompanyRevenueBase Smart SearchHeadquartersEmployeesContacts
1Indirect evidenceSan Diego, CA, United StatesHQ checked Sep 7, 20265,001-10,0008,987 contacts →

“At Illumina, our goal is to apply innovative technologies and revolutionary assays to the analysis of genetic variation and function, making studies possible that were not even…”

Source: company website · checked Sep 7, 2026
2Indirect evidenceSan Diego, CA, United StatesHQ checked Sep 7, 202651-200135 contacts →

“Agena Bioscience® empowers research laboratories worldwide to deliver scalable targeted genomic data.”

Source: company website · checked Sep 7, 2026
3Partial evidenceSan Diego, CA, United StatesHQ checked Sep 7, 202651-200121 contacts →

“Iambic is a clinical-stage life sciences & technology company developing novel medicines using its AI-driven platform.”

Source: company website · checked Sep 7, 2026
4Indirect evidenceSan Diego, CA, United StatesHQ checked Sep 7, 2026501-1,000107 contacts →

“Maravai brands set the standard in nucleic acid products and services, enzyme development, and biologics safety testing.”

Source: company website · checked Sep 7, 2026
5Partial evidenceSan Diego, CA, United StatesHQ checked Sep 7, 202651-20078 contacts →

“BioTuring is an innovative bioinformatics company based in San Diego.”

Source: company website · checked Sep 7, 2026
6Partial evidenceSan Diego, CA, United StatesHQ checked Sep 7, 202611-5070 contacts →

“Inocras is a bioinformatics-led company redefining precision health through whole genome data and proprietary analytics.”

Source: company website · checked Sep 7, 2026
7Indirect evidenceSan Diego, CA, United StatesHQ checked Sep 7, 202651-20055 contacts →

“Eton Bioscience Inc.”

Source: company website · checked Sep 7, 2026
8Indirect evidenceSan Diego, CA, United StatesHQ checked Sep 7, 202611-5050 contacts →

“Certis Oncology is transforming how oncology R&D decisions are made.”

Source: company website · checked Sep 7, 2026
9Indirect evidenceSan Diego, CA, United StatesHQ checked Sep 7, 202611-5049 contacts →

“Eclipsebio develops first-in-class technologies, analyses, and platforms for the development of tomorrow’s RNA-based and RNA-targeting therapies.”

Source: company website · checked Sep 7, 2026
10Partial evidenceSan Diego, CA, United StatesHQ checked Sep 7, 202611-5047 contacts →

“iBio is a cutting-edge biotech company leveraging AI and advanced computational biology to develop next-generation biopharmaceuticals for cardiometabolic and cardiopulmonary…”

Source: company website · checked Sep 7, 2026
11Indirect evidenceSan Diego, CA, United StatesHQ checked Sep 7, 202611-5040 contacts →

“Headquartered in San Diego, CA, iXCells Biotechnologies is a leading cell biology and cell technology company specializing in preclinical drug discovery solutions with focus on…”

Source: company website · checked Sep 7, 2026
12Indirect evidenceSan Diego, CA, United StatesHQ checked Sep 7, 202611-5030 contacts →

“Allele Biotechnology and Pharmaceuticals, Inc.”

Source: company website · checked Sep 7, 2026
13Indirect evidenceSan Diego, CA, United StatesHQ checked Sep 7, 202611-5030 contacts →

“Light Horse is leading the way in precision genome editing applied to small molecule drug discovery, pioneering approaches to target the root causes of disabling and…”

Source: company website · checked Sep 7, 2026
14Indirect evidenceSan Diego, United StatesHQ checked Sep 7, 202611-5019 contacts →

“Alida Biosciences is developing the next generation of RNA analysis tools to enable new medical treatments and diagnostic assays.”

Source: company website · checked Sep 7, 2026
15Indirect evidenceSan Diego, CA, United StatesHQ checked Sep 7, 20261-1015 contacts →

“Yatiri Bio was created to address the inefficiencies of cancer drug discovery and development, focusing on the translational gap between discovery and clinical success.”

Source: company website · checked Sep 7, 2026
16Indirect evidenceSan Diego, CA, United StatesHQ checked Sep 7, 202611-5014 contacts →

“Jumpcode Genomics is changing the way scientists see their samples with our proprietary CRISPRclean® technology.”

Source: company website · checked Sep 7, 2026
17Indirect evidenceSan Diego, CA, United StatesHQ checked Sep 7, 202611-5012 contacts →

“Partek Incorporated, an Illumina provides analysis software and services for life sciences research and specializes in innovative solutions for integrated genomics, big data, and…”

Source: company website · checked Sep 7, 2026
18Indirect evidenceSan Diego, CA, United StatesHQ checked Sep 7, 202611-5011 contacts →

“Sarmal is a San Diego-based entrepreneurial research and development team developing breakthrough technologies in advanced nucleic acid sequencing and nucleic acid-based detection.”

Source: company website · checked Sep 7, 2026
19Indirect evidenceSan Diego, CA, United StatesHQ checked Sep 7, 202611-509 contacts →

“QBI engineers customized, multiplexed biosensors and immunoassays with applications in pharmaceutical process control, water quality monitoring, diagnostics, and industrial…”

Source: company website · checked Sep 7, 2026
20Indirect evidenceSan Diego, CA, United StatesHQ checked Sep 7, 20261-109 contacts →

“esBiolab is a dynamic and fast-growing startup company located in San Diego.”

Source: company website · checked Sep 7, 2026
21Indirect evidenceSan Diego, CA, United StatesHQ checked Sep 7, 20261-106 contacts →

“Koliber Biosciences is a computational biology company that specializes in building machine learning models for peptide discovery and optimization.”

Source: company website · checked Sep 7, 2026
22Indirect evidenceSan Diego, CA, United StatesHQ checked Sep 7, 202651-2006 contacts →

“Based in San Diego and founded in 2013, Omniome is a biotechnology company developing a proprietary DNA sequencing platform capable of delivering unsurpassed sequencing accuracy.”

Source: company website · checked Sep 7, 2026
23Indirect evidenceSan Diego, CA, United StatesHQ checked Sep 7, 20261-106 contacts →

“decoding the language of discovery.”

Source: company website · checked Sep 7, 2026
24Indirect evidenceSan Diego, CA, United StatesHQ checked Sep 7, 20261-105 contacts →

“Capienda Biotech is accelerating drug discovery for the pharmaceutical industry.”

Source: company website · checked Sep 7, 2026
25Indirect evidenceSan Diego, CA, United StatesHQ checked Sep 7, 20261-105 contacts →

“Hygia Reagents is a San Diego–based GMP-ready CDMO specializing in custom media, buffers, reagents, and small-batch manufacturing for biotech, cell and gene therapy, and…”

Source: company website · checked Sep 7, 2026

Showing 25 of 59 AI bioinformatics companies based in San Diego, United States

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AI bioinformatics companies based in San Diego, United States at a glance

As of Sep 7, 2026
46.8%Verified-email coverage
178.0Average contacts per company
11-50Median size (employees)
100.0%Largest-city concentration · San Diego
Sep 7, 2026Page data refreshed

Companies by employee count

1-10
29
11-50
20
51-200
7
201-500
1
501-1,000
1
5,001-10,000
1

Email recency for this list is measured across the whole United States list rather than this city, so it is reported there. Company counts and contact totals on this page are exact for San Diego, over 59 companies.

How this list was built

Company categories are rarely black and white. RevenueBase reads each company's own description of its business to decide whether it belongs among AI bioinformatics companies, so some rows will be adjacent to the category rather than pure plays. The description and RevenueBase Smart Search rating on every row are there so you can check each match yourself.

Source
The RevenueBase company graph: 60 million companies and 398.9 million professional contacts resolved from primary sources, queried with RevenueBase Smart Search, the natural-language company search available to every RevenueBase user.
What qualifies
Companies headquartered in San Diego, United States whose own description of what they do matches “AI bioinformatics companies”. Matching reads each company's description, not its industry code or its name.
RevenueBase Smart Search
RevenueBase Smart Search is how this list is assembled and how each row is rated. RevenueBase's data engine and AI assess a company's LinkedIn profile, information supplied directly by the company, its website and other publicly available information, then relate it to a category defined in a user's own words. Each row is rated strong evidence (its own description names AI bioinformatics companies), partial evidence (it names part of the category) or indirect evidence (the description shown names none of it and the match rests on the rest of the company's profile). The description supporting each rating is quoted on the row.
What we exclude
Companies whose own description does not clearly place them among AI bioinformatics companies, and records with no verified work email. Companies headquartered outside San Diego are excluded even when they keep an office there.
Match quality
In blind human judging of this matching method, 86% of matched companies were on target. Expect roughly 1 in 7 rows to be adjacent to the category rather than a pure play. Every row shows the company's own description and its RevenueBase Smart Search rating so you can judge each match yourself. Read the full methodology: how the lists are built, how the judging worked, and what the figure means.
Ranking
Team size, largest first: companies are ordered by the number of professionals RevenueBase tracks at each one. Employee ranges shown are reported bands, for context.
Verification
Every listed company carries at least one verified work email, 4,913 across the full list. Contacts re-verify on a rolling cadence, and each contact's own verification date is shown inside RevenueBase.
Refresh
This page's figures were pulled from the company graph on September 7, 2026. Lists refresh periodically as the graph is re-checked.
Corrections
Wrong category, wrong headquarters, or a company that has closed? Use “Report an issue” on any row. Reports go to the RevenueBase Data Team and feed back into the company graph.

AI bioinformatics companies by metro in the United States

Frequently asked

What is RevenueBase Smart Search?

RevenueBase Smart Search is how RevenueBase decides which companies belong on this list and how strongly each one fits. Its data engine and AI assess a company's LinkedIn profile, information supplied directly by the company, its website and other publicly available information, then relate it to the category the list is about. Each row is rated strong evidence when the company's own description names AI bioinformatics companies, partial evidence when it names part of the category, and indirect evidence when the description shown names none of it and the match rests on the rest of the company's profile.

How many AI bioinformatics companies are there based in San Diego, United States?

RevenueBase identified 59 AI bioinformatics companies headquartered in San Diego, United States as of September 2026, matched on each company's own description of what it does rather than its industry code.

What is the largest company on this list?

Illumina, headquartered in San Diego, tops this list with the largest team on record.

Which city has the most AI bioinformatics companies?

San Diego leads with 59 headquartered companies, followed by Cambridge (51) and San Francisco (49).

How do I get contact information for these companies?

A free RevenueBase account lets you run this exact search and work the top results, verified emails and direct dials included. Upgrading unlocks all 4,913 verified decision-maker contacts tracked across these 59 companies.

How current is this list?

The list refreshes periodically as the company graph is re-checked. This page's figures were pulled on September 7, 2026.

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About this data

RevenueBase is a B2B data infrastructure company. Its company graph covers 60 million companies and 398.9 million professional contacts, with emails verified on a rolling cadence rather than scraped once and left to decay. These company lists are generated directly from that graph with RevenueBase Smart Search, the same natural-language company search every RevenueBase user has: describe a market in plain words, get the companies that match, and add verified emails and direct dials for the people at them. It is the same data that powers RevenueBase's B2B data products, and a free account includes 500 credits to start. How these lists are built and judged.